This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6rpg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:25, 24 January 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='6rpg' size='340' side='right'caption='[[6rpg]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='6rpg' size='340' side='right'caption='[[6rpg]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6rpg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RPG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RPG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6rpg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RPG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RPG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=KDW:~{N}-[2-[[4-[[3-[3-[[4-[(2-acetamidoethylamino)methyl]-5-[(5-cyanopyridin-3-yl)methoxy]-2-methyl-phenoxy]methyl]-2-methyl-phenyl]-2-methyl-phenyl]methoxy]-2-[(5-cyanopyridin-3-yl)methoxy]-5-methyl-phenyl]methylamino]ethyl]ethanamide'>KDW</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rpg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rpg OCA], [http://pdbe.org/6rpg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rpg RCSB], [http://www.ebi.ac.uk/pdbsum/6rpg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rpg ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KDW:~{N}-[2-[[4-[[3-[3-[[4-[(2-acetamidoethylamino)methyl]-5-[(5-cyanopyridin-3-yl)methoxy]-2-methyl-phenoxy]methyl]-2-methyl-phenyl]-2-methyl-phenyl]methoxy]-2-[(5-cyanopyridin-3-yl)methoxy]-5-methyl-phenyl]methylamino]ethyl]ethanamide'>KDW</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rpg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rpg OCA], [https://pdbe.org/6rpg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rpg RCSB], [https://www.ebi.ac.uk/pdbsum/6rpg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rpg ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PD1L1_HUMAN PD1L1_HUMAN]] Involved in the costimulatory signal, essential for T-cell proliferation and production of IL10 and IFNG, in an IL2-dependent and a PDCD1-independent manner. Interaction with PDCD1 inhibits T-cell proliferation and cytokine production.<ref>PMID:10581077</ref> <ref>PMID:11015443</ref>
+
[https://www.uniprot.org/uniprot/PD1L1_HUMAN PD1L1_HUMAN] Involved in the costimulatory signal, essential for T-cell proliferation and production of IL10 and IFNG, in an IL2-dependent and a PDCD1-independent manner. Interaction with PDCD1 inhibits T-cell proliferation and cytokine production.<ref>PMID:10581077</ref> <ref>PMID:11015443</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Basu, S]]
+
[[Category: Basu S]]
-
[[Category: Holak, T A]]
+
[[Category: Holak TA]]
-
[[Category: Hu, L]]
+
[[Category: Hu L]]
-
[[Category: Kholodovych, V]]
+
[[Category: Kholodovych V]]
-
[[Category: Magiera-Mularz, K]]
+
[[Category: Magiera-Mularz K]]
-
[[Category: Musielak, B]]
+
[[Category: Musielak B]]
-
[[Category: Skalniak, L]]
+
[[Category: Skalniak L]]
-
[[Category: Xu, B]]
+
[[Category: Xu B]]
-
[[Category: Yang, J]]
+
[[Category: Yang J]]
-
[[Category: Cell cycle]]
+
-
[[Category: Complex]]
+
-
[[Category: Inhibitor]]
+

Current revision

Structure of human Programmed cell death 1 ligand 1 (PD-L1) with inhibitor

PDB ID 6rpg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools