This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gwq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:39, 1 February 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='3gwq' size='340' side='right'caption='[[3gwq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3gwq' size='340' side='right'caption='[[3gwq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gwq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_cepacia_lb400 Burkholderia cepacia lb400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GWQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gwq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paraburkholderia_xenovorans_LB400 Paraburkholderia xenovorans LB400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GWQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GWQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gwq OCA], [https://pdbe.org/3gwq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gwq RCSB], [https://www.ebi.ac.uk/pdbsum/3gwq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gwq ProSAT], [https://www.topsan.org/Proteins/JCSG/3gwq TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bxeno_A0401, Bxe_A4060, YP_556991.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 Burkholderia cepacia LB400])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-serine_ammonia-lyase D-serine ammonia-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.1.18 4.3.1.18] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gwq OCA], [http://pdbe.org/3gwq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gwq RCSB], [http://www.ebi.ac.uk/pdbsum/3gwq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gwq ProSAT], [http://www.topsan.org/Proteins/JCSG/3gwq TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q145Q0_PARXL Q145Q0_PARXL]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 25: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Burkholderia cepacia lb400]]
 
-
[[Category: D-serine ammonia-lyase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Paraburkholderia xenovorans LB400]]
-
[[Category: Jcsg]]
+
-
[[Category: Lyase]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of a putative d-serine deaminase (bxe_a4060) from burkholderia xenovorans lb400 at 2.00 A resolution

PDB ID 3gwq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools