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| <StructureSection load='6aq4' size='340' side='right'caption='[[6aq4]], [[Resolution|resolution]] 1.82Å' scene=''> | | <StructureSection load='6aq4' size='340' side='right'caption='[[6aq4]], [[Resolution|resolution]] 1.82Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6aq4]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AQ4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AQ4 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6aq4]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AQ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6AQ4 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CQM:Citramalyl-CoA'>CQM</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.825Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CQM:(3R,5R,9R,21S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,21-tetrahydroxy-8,8,21-trimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphadocosan-22-oic+acid+3,5-dioxide+(non-preferred+name)'>CQM</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1u5h|1u5h]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6aq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aq4 OCA], [https://pdbe.org/6aq4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6aq4 RCSB], [https://www.ebi.ac.uk/pdbsum/6aq4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6aq4 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6aq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6aq4 OCA], [http://pdbe.org/6aq4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6aq4 RCSB], [http://www.ebi.ac.uk/pdbsum/6aq4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6aq4 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/CITEL_MYCTO CITEL_MYCTO]] May play a role in fatty acid biosynthesis. | + | [https://www.uniprot.org/uniprot/CITEL_MYCTU CITEL_MYCTU] May play a role in fatty acid biosynthesis (Potential). |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Almo, S C]] | + | [[Category: Mycobacterium tuberculosis H37Rv]] |
- | [[Category: Bonanno, J B]] | + | [[Category: Almo SC]] |
- | [[Category: Carvalho, L]] | + | [[Category: Bonanno JB]] |
- | [[Category: Fedorov, A A]] | + | [[Category: Carvalho L]] |
- | [[Category: Fedorov, E V]] | + | [[Category: Fedorov AA]] |
- | [[Category: Wang, H]] | + | [[Category: Fedorov EV]] |
- | [[Category: Cite]]
| + | [[Category: Wang H]] |
- | [[Category: Citramalyl-coa]]
| + | |
- | [[Category: Lyase]]
| + | |
- | [[Category: Mycobacterium tuberculosis]]
| + | |
- | [[Category: Tim-barrel fold]]
| + | |
- | [[Category: Trimer]]
| + | |
| Structural highlights
6aq4 is a 3 chain structure with sequence from Mycobacterium tuberculosis H37Rv. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 1.825Å |
Ligands: | , , , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
CITEL_MYCTU May play a role in fatty acid biosynthesis (Potential).
Publication Abstract from PubMed
Mycobacterium tuberculosis (Mtb) is the etiological agent of tuberculosis. One-fourth of the global population is estimated to be infected with Mtb, accounting for approximately 1.3 million deaths in 2017. As part of the immune response to Mtb infection, macrophages produce metabolites with the purpose of inhibiting or killing the bacterial cell. Itaconate is an abundant host metabolite thought to be both an antimicrobial agent and a modulator of the host inflammatory response. However, the exact mode of action of itaconate remains unclear. Here, we show that Mtb has an itaconate dissimilation pathway and that the last enzyme in this pathway, Rv2498c, also participates in l-leucine catabolism. Our results from phylogenetic analysis, in vitro enzymatic assays, X-ray crystallography, and in vivo Mtb experiments, identified Mtb Rv2498c as a bifunctional beta-hydroxyacyl-CoA lyase and that deletion of the rv2498c gene from the Mtb genome resulted in attenuation in a mouse infection model. Altogether, this report describes an itaconate resistance mechanism in Mtb and an l-leucine catabolic pathway that proceeds via an unprecedented (R)-3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) stereospecific route in nature.
An essential bifunctional enzyme in Mycobacterium tuberculosis for itaconate dissimilation and leucine catabolism.,Wang H, Fedorov AA, Fedorov EV, Hunt DM, Rodgers A, Douglas HL, Garza-Garcia A, Bonanno JB, Almo SC, de Carvalho LPS Proc Natl Acad Sci U S A. 2019 Jul 18. pii: 1906606116. doi:, 10.1073/pnas.1906606116. PMID:31320588[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wang H, Fedorov AA, Fedorov EV, Hunt DM, Rodgers A, Douglas HL, Garza-Garcia A, Bonanno JB, Almo SC, de Carvalho LPS. An essential bifunctional enzyme in Mycobacterium tuberculosis for itaconate dissimilation and leucine catabolism. Proc Natl Acad Sci U S A. 2019 Jul 18. pii: 1906606116. doi:, 10.1073/pnas.1906606116. PMID:31320588 doi:http://dx.doi.org/10.1073/pnas.1906606116
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