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User:Kasha Maslowski/Sandbox 2

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< User:Kasha Maslowski(Difference between revisions)
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(New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...)
Current revision (06:01, 7 August 2019) (edit) (undo)
 
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==Your Heading Here (maybe something like 'Structure')==
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<StructureSection load='' size='600' side='right' caption='Just a little droplet of water' scene='82/822541/Water_droplet/2'>
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<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
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==Instructions==
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This is a default text for your page '''Kasha Maslowski/Sandbox 2'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
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Wait for the 3D representation of a droplet of water to load to the right. Once it has loaded, practice interacting with the model. The following instruction were written using a Chromebook, but will will most likely work on any device with a track pad.
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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*Click and hold the trackpad with one finger while dragging across the trackpad to rotate the 3D model.
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*Trace two fingers at once across the trackpad to zoom in and out.
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*Clicking the popup button will open a popup window of the 3D model that you can resize.
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== Function ==
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When you are ready, click on the unknown molecules below. It may take a moment for the model to load. If at any time you would like to see the water droplet model again
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<Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
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<scene name='82/822541/Water_droplet/2'>click here to reload it.</scene><ref name="angel">Herráez, Angel, and Michael Bruist. “Intermolecular Hydrogen Bonds in Liquid Water and in Ice.” Structure of Water and Ice, biomodel.uah.es/en/water/p1.htm | [http://biomodel.uah.es/en/water/p1.htm]</ref>
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== Disease ==
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== Relevance ==
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==Set of Unknown Molecules==
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== Structural highlights ==
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The models in the table below are a random assortment of different biologically important molecules. Please note that molecules highlighted in yellow have many more repeated units than what is shown in the models. Molecule C as shown has two separate subunits,
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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{| class="wikitable"
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|-
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| style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_a/2'>Molecule A</scene><ref name="porto">Molecular models in this page were created or modified from [[PDB files]] by [[User:Alejandro Porto|Alejandro Porto]] using the tool JSME Molecular Editor [http://biomodel.uah.es/en/DIY/JSME/draw.es.htm]</ref>
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| <scene name='82/822541/Molecule_b/1'>Molecule B</scene><ref name="porto" />
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| <scene name='82/822541/Molecule_c/14'>Molecule C</scene>
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| <scene name='82/822541/Molecule_d2/1'>Molecule D</scene>
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|-
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| style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_e/1'>Molecule E</scene>
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| <scene name='82/822541/Molecule_f/1'>Molecule F</scene>
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| <scene name='82/822541/Molecule_g/1'>Molecule G</scene><ref name="porto" />
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| style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_h/1'>Molecule H</scene><ref name="porto" />
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|-
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| <scene name='82/822541/Molecule_i/1'>Molecule I</scene>
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| style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_j3/2'>Molecule J</scene>
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| <scene name='82/822541/Molecule_k/1'>Molecule K</scene>
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| <scene name='82/822541/Molecule_l/1'>Molecule L</scene>
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|-
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| <scene name='82/822541/Molecule_m/2'>Molecule M</scene>
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| style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_n/3'>Molecule N</scene><ref name="biot">From Biotopics website[https://www.biotopics.co.uk/jsmol/glycogen.html]</ref>
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| <scene name='82/822541/Molecule_o/1'>Molecule O</scene><ref name="porto" />
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| <scene name='82/822541/Molecule_p/1'>Molecule P</scene>
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|}
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

Just a little droplet of water

Drag the structure with the mouse to rotate

References

  1. ↑ Herráez, Angel, and Michael Bruist. “Intermolecular Hydrogen Bonds in Liquid Water and in Ice.” Structure of Water and Ice, biomodel.uah.es/en/water/p1.htm | [1]
  2. ↑ 2.0 2.1 2.2 2.3 2.4 Molecular models in this page were created or modified from PDB files by Alejandro Porto using the tool JSME Molecular Editor [2]
  3. ↑ From Biotopics website[3]

Proteopedia Page Contributors and Editors (what is this?)

Kasha Maslowski

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