Phosphoribosyltransferase

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== Structural highlights ==
== Structural highlights ==
The structure of the yeast OPRT contains the two reaction products: <scene name='52/525122/Cv/14'>orotate</scene> and <scene name='52/525122/Cv/15'>PRPP</scene><ref name="Gonza" />. <scene name='52/525122/Cv/17'>Mg coordination site</scene>. Water molecules are shown as red spheres. <scene name='52/525122/Cv/16'>Whole binding site</scene>.
The structure of the yeast OPRT contains the two reaction products: <scene name='52/525122/Cv/14'>orotate</scene> and <scene name='52/525122/Cv/15'>PRPP</scene><ref name="Gonza" />. <scene name='52/525122/Cv/17'>Mg coordination site</scene>. Water molecules are shown as red spheres. <scene name='52/525122/Cv/16'>Whole binding site</scene>.
- 
-
</StructureSection>
 
==3D structures of phosphoribosyltransferase==
==3D structures of phosphoribosyltransferase==
 +
[[Phosphoribosyltransferase 3D structures]]
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+
</StructureSection>
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{{#tree:id=OrganizedByTopic|openlevels=0|
+
-
 
+
-
*'''Orotate phosphoribosyltransferase'''
+
-
 
+
-
**[[1oro]] - EcOPRT – ''Escherichia coli''<br />
+
-
**[[1j7j]] - StOPRT – ''Salmonella typhimurium''<br />
+
-
**[[2aee]] - OPRT – ''Streptococcus pyogenes''<br />
+
-
**[[3dez]] - OPRT – ''Streptococcus mutans''<br />
+
-
**[[2yzk]] – OPRT – ''Aeropyrum pernix''<br />
+
-
**[[2pry]] - yOPRT – yeast<br />
+
-
**[[3m3h]] - BaOPRT – ''Bacillus anthracis''<br />
+
-
**[[3mjd]] - OPRT – ''Francisella tularensis''<br />
+
-
**[[3n2l]] - VcOPRT – ''Vibrio cholera''<br />
+
-
**[[3qw3]], [[3qw4]] - OPRT – ''Leishmania infantum''<br />
+
-
**[[2p1z]] – OPRT – ''Corynebacterium diphtheriae''<br />
+
-
**[[4fym]] - PfOPRT – ''Plasmodium falciparum''<br />
+
-
**[[4ohc]] – OPRT – ''Burkholderia cenocepacia''<br />
+
-
**[[4paw]] – HpOPRT – ''Helicobacter pylori''<br />
+
-
 
+
-
*Orotate phosphoribosyltransferase complex
+
-
 
+
-
**[[1sto]] – StOPRT + OMP<br />
+
-
**[[2prz]] - yOPRT + OMP<br />
+
-
**[[2qcn]], [[2wns]], [[3l0k]], [[3l0n]], [[3mo7]] – hOPRT + UMP derivative<br />
+
-
**[[3mi2]] - hOPRT + pyrazofurin monophosphate<br />
+
-
**[[4hib]], [[4hkp]] - hOPRT + inhibitor<br />
+
-
**[[4rv4]] - BaOPRT + PRPP<BR />
+
-
**[[4wml]], [[4wn3]] - yOPRT + PRPP<BR />
+
-
**[[1opr]], [[1lh0]] - StOPRT + orotate + PRPP<BR />
+
-
**[[2ps1]] - yOPRT + orotate + PRPP<BR />
+
-
**[[5hki]] – MtOPRT + Fe-citrate – ''Mycobacterium tuberculosis'' <br />
+
-
**[[5hkf]] - MtOPRT + PRPP<BR />
+
-
**[[5hkl]] - MtOPRT (mutant) + Pi<BR />
+
-
 
+
-
*'''Hypoxanthine-guanine phosphoribosyltransferase'''
+
-
 
+
-
**[[1nul]], [[1grv]] - EcHPRT <br />
+
-
**[[1dbr]] - TgHPRT – ''Toxoplasma gondii''<br />
+
-
**[[1tc1]] - TcHPRT – ''Trypanosoma cruzi''<br />
+
-
**[[1r3u]] - TteHPRT – ''Thermoanaerobacter tengongensis''<br />
+
-
**[[2geb]] - TteHPRT (mutant) <br />
+
-
**[[1vdm]] - PhHPRT – ''Pyrococcus horikoshii''<br />
+
-
**[[1z7g]] - hHPRT <br />
+
-
**[[3h83]], [[3hvu]], [[3o7m]], [[4qyi]] - BaHPRT<br />
+
-
**[[3acb]] - TtHPRT – ''Thermus thermophilus''<br />
+
-
**[[3ohp]] - VcHPRT <br />
+
-
**[[4lyy]] – HPRT – ''Shewanella pealeana''<br />
+
-
**[[4pfq]] – HPRT – ''Brachybacterium faecium''<br />
+
-
**[[4qri]] – HPRT – ''Leptospira interrogans''<br />
+
-
**[[4rqa]], [[4rqb]] – HPRT – ''Staphylococcus aureus''<br />
+
-
 
+
-
*Hypoxanthine-guanine phosphoribosyltransferase binary complex
+
-
 
+
-
**[[1a98]], [[1a97]] - EcHPRT (mutant) + GMP<br />
+
-
**[[1g9s]] - EcHPRT + IMP<BR />
+
-
**[[1g9t]] - EcHPRT + GMP<br />
+
-
**[[1hmp]], [[2vfa]] - hHPRT + GMP<br />
+
-
**[[3gep]], [[3ggj]], [[4jit]], [[4jls]] - hHPRT + guanine derivative<br />
+
-
**[[3ggc]] - hHPRT + hypoxanthine derivative<br />
+
-
**[[4ijq]], [[4rab]], [[4rac]], [[4rad]], [[4ran]], [[4rao]], [[4raq]] - hHPRT + inhibitor<br />
+
-
**[[4kn6]] - hHPRT + antiviral agent<br />
+
-
**[[1hgx]] - HPRT + GMP – ''Tritrichomonas foetus''<br />
+
-
**[[1qk3]] - TgHPRT + GMP<br />
+
-
**[[1qk4]] - TgHPRT + IMP<BR />
+
-
**[[1p19]] - TcHPRT + IMP<BR />
+
-
**[[1p17]] - TcHPRT (mutant) + IMP<BR />
+
-
**[[1yfz]] - TteHPRT + IMP<BR />
+
-
**[[1dqp]] - GiHPRT + imucillin – ''Giardia intestinalis''<br />
+
-
**[[1pzm]] - LtHPRT + GMP – ''Leishmania tarentolae''<br />
+
-
**[[1y0b]] - BsHPRT + GTP – ''Bacillus subtilis''<br />
+
-
**[[2fxv]] - BsHPRT + GMP<br />
+
-
**[[3kb8]] - BaHPRT + GMP<br />
+
-
**[[2jky]], [[2jkz]], [[2xbu]] - yHPRT + GMP<br />
+
-
**[[3acc]] - TtHPRT + GMP<br />
+
-
**[[3acd]] - TtHPRT + IMP<BR />
+
-
**[[1cjb]] - PfHPRT + pyrophosphate <br />
+
-
**[[3ozf]] - PfHPRT + hypoxanthine<br />
+
-
**[[3ozg]] - PfHPRT + inhibitor<br />
+
-
**[[1dqn]] - GiHPRT + transition state analog<br />
+
-
**[[1d6n]] - LdHPRT + AMP derivative<br />
+
-
**[[4z1o]] - SsHPRT + PRPP - ''Sulfolobus solfataricus''<br />
+
-
**[[4zfn]] - SsHPRT + GMP<br />
+
-
 
+
-
*Hypoxanthine-guanine phosphoribosyltransferase ternary complex
+
-
 
+
-
**[[1a95]] - EcHPRT + guanine + PRPP derivative<br />
+
-
**[[1a96]] - EcHPRT + xanthine + PRPP derivative<br />
+
-
**[[1bzy]] - hHPRT + inhibitor + guanine derivative<br />
+
-
**[[1tc2]], [[1i0i]], [[1i0l]], [[1i13]], [[1i14]] – TcHPRT + pyrimidine derivative + PRPP derivative<br />
+
-
**[[1p18]] - TcHPRT (mutant) + pyrimidine derivative + PRPP<BR />
+
-
**[[1qk5]] - TgHPRT (mutant) + XMP + pyrophosphate<br />
+
-
**[[1fsg]] - TgHPRT + guanine derivative + PRPP<BR />
+
-
**[[1cjb]] - PfHPRT + pyrophosphate + inhibitor<br />
+
-
 
+
-
*'''Quinolinic acid phosphoribosyltransferase'''
+
-
 
+
-
**[[1o4u]] - TmQAPRT – ''Thermotoga maritima''<br />
+
-
**[[2jbm]], [[5ayx]], [[4kwv]] – hQAPRT<br />
+
-
**[[3c2e]] - yQAPRT <br />
+
-
**[[1qpo]] – MtQAPRT – ''Mycobacterium tuberculosis'' <br />
+
-
 
+
-
*Quinolinic acid phosphoribosyltransferase complex
+
-
 
+
-
**[[1qap]] - StQAPRT + quinolinic acid<br />
+
-
**[[1qpr]] - MtQAPRT + PRPP derivative <br />
+
-
**[[1qpn]] – MtQAPRT + nicotinate mononucleotide <br />
+
-
**[[1qpq]] - MtQAPRT + quinolinic acid<br />
+
-
**[[5ayy]] - hQAPRT + quinolinic acid<br />
+
-
**[[3c2o]] - yQAPRT + quinolinic acid<br />
+
-
**[[3c2f]] - yQAPRT + PRPP<BR />
+
-
**[[3c2r]] - yQAPRT + inhibitor<br />
+
-
**[[3c2v]] - yQAPRT + inhibitor + PRPP<BR />
+
-
**[[4i9a]] – QAPRT + nicotinate mononucleotide – pig<br />
+
-
**[[2b7n]] – HpQAPRT + quinolinic acid <br />
+
-
**[[4kww]] – hQAPRT + phthalate <br />
+
-
**[[2b7p]] – HpQAPRT + phthalate <br />
+
-
**[[2b7q]] – HpQAPRT + nicotinate mononucleotide <br />
+
-
**[[5ayz]] – hQAPRT + nicotinate mononucleotide <br />
+
-
 
+
-
*'''Uracil phosphoribosyltransferase'''
+
-
 
+
-
**[[1w30]], [[5e38]] - MtUPRT <br />
+
-
**[[1bd3]] - TgUPRT (mutant) <br />
+
-
**[[1v9s]] - TtUPRT <br />
+
-
**[[2e55]] - UPRT – ''Aquifex aeolicus'' <br />
+
-
**[[2ehj]] - EcUPRT <br />
+
-
**[[3dmp]] - UPRT – ''Burkholderia pseudomallei''
+
-
 
+
-
*Uracil phosphoribosyltransferase complex
+
-
 
+
-
**[[1upu]] - TgUPRT (mutant) + UMP<br />
+
-
**[[1o5o]] - TmUPRT + UMP<br />
+
-
**[[1jlr]] - TgUPRT (mutant) + GTP<br />
+
-
**[[1bd4]] - TgUPRT (mutant) + uracil<br />
+
-
**[[1upf]] - TgUPRT (mutant) + fluorouracil<br />
+
-
**[[1i5e]], [[2igb]] - UPRT + UMP – ''Bacillus caldolyticus''<br />
+
-
**[[1jls]] - TgUPRT (mutant) + uracil + PRPP<BR />
+
-
**[[1vst]], [[3g6w]] - SsUPRT + GTP + PRPP
+
-
 
+
-
*'''Adenine phosphoribosyltransferase'''
+
-
 
+
-
**[[1qcc]], [[1qcd]] - LdAPRT – ''Leishmania donovani''<br />
+
-
**[[1g2p]], [[1g2q]] – yAPRT <br />
+
-
**[[2dy0]] - EcAPRT <br />
+
-
**[[4lza]] – APRT – ''Thermoanaerobacter pseudethanolicus''<br />
+
-
**[[4m0k]] – APRT – ''Rhodothermus marinus''<br />
+
-
**[[4mb6]] – YpAPRT – ''Yersinia pseudotuberculosis''<br />
+
-
**[[4trb]] – SsAPRT <br />
+
-
 
+
-
*Adenine phosphoribosyltransferase complex
+
-
+
-
**[[1qb7]] - LdAPRT + adenine<br />
+
-
**[[4trc]] - SsAPRT + adenine<br />
+
-
**[[4ts5]] - SsAPRT + AMP<br />
+
-
**[[1qb8]] - LdAPRT + AMP<br />
+
-
**[[1ore]], [[1zn8]], [[1zn9]] - hAPRT + AMP<br />
+
-
**[[4x44]], [[4x45]] - hAPRT (mutant) + AMP - human<br />
+
-
**[[5b6h]] - YpAPRT + AMP <br />
+
-
**[[1mzv]] - LtAPRT + AMP<br />
+
-
**[[4ts7]] - SsAPRT + ADP<br />
+
-
**[[1zn7]] - hHGPRT + adenine + PRPP<BR />
+
-
**[[1l1q]] - GiAPRT + adenine derivative<br />
+
-
**[[1l1r]] - GiAPRT + adenine derivative + PRPP<BR />
+
-
 
+
-
*'''Nicotinate mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase'''
+
-
 
+
-
**[[1l4b]] – StNN:DBI PRT <br />
+
-
**[[4kqh]] - StNN:DBI PRT (mutant)<br />
+
-
**[[1wx1]] – TtNN:DBI PRT <br />
+
-
**[[3u4g]] – PhNN:DBI PRT
+
-
 
+
-
*Nicotinate mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase complex
+
-
 
+
-
**[[1jh8]], [[4kqf]] – StNN:DBI PRT + adenine<br />
+
-
**[[1l4e]], [[1l4f]], [[1l4g]], [[1l4h]], [[1l4k]], [[1l4l]], [[1l4m]], [[1l4n]], [[1l5f]], [[1l5k]], [[1l5l]], [[1l5m]], [[1l5n]], [[1l5o]] - StNN:DBI PRT + product-aldimine complex<br />
+
-
**[[1jha]] – StNN:DBI PRT + AMP + nicotinate<br />
+
-
**[[4kqi]], [[1dov]] - StNN:DBI PRT (mutant) + nicotinate + α-ribazole phosphate<br />
+
-
**[[1jhm]] – StNN:DBI PRT + benzimidazole<br />
+
-
**[[1jho]] – StNN:DBI PRT + NaMN + benzimidazole<br />
+
-
**[[1jhp]], [[1d0s]] – StNN:DBI PRT + benzimidazole derivative<br />
+
-
**[[1jhq]] - StNN:DBI PRT + NaMN + benzimidazole derivative<br />
+
-
**[[1jhr]] - StNN:DBI PRT + NaMN + hydroxypurine<br />
+
-
**[[1jhu]] - StNN:DBI PRT + cresol<br />
+
-
**[[4kqk]] - StNN:DBI PRT (mutant) + cresol<br />
+
-
**[[1jhv]] - StNN:DBI PRT + nicotinate + cresol<br />
+
-
**[[1jhx]] - StNN:DBI PRT + phenol<br />
+
-
**[[1jhy]] - StNN:DBI PRT + phenol + nicotinate<br />
+
-
**[[4kqj]] - StNN:DBI PRT (mutant) + NaMN + cresol<br />
+
-
**[[4kqg]] - StNN:DBI PRT (mutant) + cobamide<br />
+
-
 
+
-
*'''Anthranilate phosphoribosyltransferase'''
+
-
 
+
-
**[[1o17]] - SsANPRT <br />
+
-
**[[1khd]] – PcANPRT – ''Pectobacterium carotovorum''<br />
+
-
**[[1v8g]], [[2elc]] - TtANPRT <br />
+
-
**[[1vqu]] - ANPRT – Nostoc<br />
+
-
**[[3qr9]], [[5c2l]] – MtANPRT<br />
+
-
**[[4x5a]] - MtANPRT (mutant) <BR />
+
-
**[[4hkm]] - ANPRT – ''Xanthomonas campestris''<br />
+
-
**[[4gtn]] – AcANPRT – ''Acinetobacter''<br />
+
-
 
+
-
*Anthranilate phosphoribosyltransferase complex containing anthranilate
+
-
 
+
-
**[[4owm]], [[4own]], [[4owo]], [[4owq]], [[4ows]], [[4owu]], [[4n5v]], 4n93]] - MtANPRT + PRPP + anthranilate derivative<BR />
+
-
**[[4ij1]], [[4m0r]], [[4owv]], [[4n8q]] - MtANPRT + anthranilate derivative <br />
+
-
**[[4x5d]] - MtANPRT (mutant) + anthranilate<BR />
+
-
**[[4x5e]] - MtANPRT (mutant) + anthranilate + POP<BR />
+
-
**[[1zyk]] - SsANPRT + anthranilate + PRPP<BR />
+
-
**[[4giu]], [[4gkm]]- PfANPRT + anthranilate derivative + PRPP<br />
+
-
**[[4yi7]] - AcMtANPRT + anthranilate<BR />
+
-
 
+
-
*Anthranilate phosphoribosyltransferase other complexes
+
-
+
-
**[[1kgz]] - PcANPRT + PRPP<BR />
+
-
**[[1zvw]], [[5byt]], [[5c1r]], [[5c7s]] - MtANPRT + PRPP<BR />
+
-
**[[4x58]], [[4x59]], [[4x5b]] - MtANPRT (mutant) + PRPP<BR />
+
-
**[[4x5c]] - MtANPRT (mutant) + PRPP + POP<BR />
+
-
**[[1zxy]] - SsANPRT + PRPP<BR />
+
-
**[[3gbr]] - SsANPRT (mutant) + PRPP<BR />
+
-
**[[1gxb]] - SsANPRT + POP<br />
+
-
**[[2gvq]] - SsANPRT + anthranilate<br />
+
-
**[[4ztv]], [[5bne]], [[5bo2]], [[5bo3]] - MtANPRT + inhibitor <BR />
+
-
**[[3qqs]], [[3qs8]], [[3qsa]], [[3r6c]], [[3r88]], [[3twp]], [[3uu1]], [[4zof]], [[4zoj]], [[4zok]] - MtANPRT + inhibitor + PRPP<BR />
+
-
 
+
-
*'''ATP phosphoribosyltransferase''' See [[ATP Phosphoribosyl Transferase]]
+
-
 
+
-
*'''Nicotinate phosphoribosyltransferase'''
+
-
 
+
-
**[[1vlp]] - yNIPRT <br />
+
-
**[[1ybe]] - NIPRT – ''Agrobacterium tumefaciens''<br />
+
-
**[[1yir]] - NIPRT – ''Pseudomonas aeruginosa''<br />
+
-
**[[1ytd]], [[2i1o]] - TaNIPRT – ''Thermoplasma acidophilum''<br />
+
-
**[[2bpq]] - MtNIPRT <br />
+
-
**[[2im5]] - NIPRT – ''Porphyromonas gingivalis''<br />
+
-
**[[3os4]] - NIPRT – ''Yersinia pestis''<br />
+
-
**[[4hl7]] - VcNIPRT <br />
+
-
**[[4yub]] - hNIPRT <br />
+
-
 
+
-
*Nicotinate phosphoribosyltransferase complex
+
-
 
+
-
**[[1yte]] - TaNIPRT + PRPP<BR />
+
-
**[[1ytk]] - TaNIPRT + NAMN<br />
+
-
**[[4mzy]] – NIPRT + malonate + Pi<br />
+
-
 
+
-
*'''Nicotinamide phosphoribosyltransferase'''
+
-
 
+
-
**[[2gvl]] - mNMPRT – mouse<br />
+
-
**[[2g95]] - NMPRT - rat<br />
+
-
**[[2h3b]] – mNMPRT (mutant) <br />
+
-
**[[2e5b]] – hNMPRT
+
-
*Nicotinamide phosphoribosyltransferase complex
 
-
 
-
**[[2h3d]] - mNMPRT + NMN<BR />
 
-
**[[2gvg]] - hNMPRT + NMN<BR />
 
-
**[[2g96]] - rNMPRT + NMN<BR />
 
-
**[[2g97]], [[3g8e]] - rNMPRT + FK-866<br />
 
-
**[[2gvj]] - hNMPRT + FK-866<br />
 
-
**[[2e5c]] - hNMPRT + PRPP<BR />
 
-
**[[2e5d]] - hNMPRT + nicotinamide<br />
 
-
**[[3dgr]] - hNMPRT + ADP analog<br />
 
-
**[[4jnm]], [[4jr5]], [[4kfn]], [[4kfo]], [[4kfp]], [[4lts]], [[4lv9]], [[4lva]], [[4lvb]], [[4lvd]], [[4lvf]], [[4lvg]], [[4lww]], [[4m6p]], [[4m6q]], [[4n9b]], [[4n9c]], [[4n9d]], [[4n9e]], [[4l4l]], [[4l4m]], [[4o0z]], [[4o10]], [[4o12]], [[4o13]], [[4o14]], [[4o15]], [[4o16]], [[4o17]], [[4o18]], [[4o19]], [[4o1a]], [[4o1b]], [[4o1c]], [[4o1d]], [[4wq6]], [[4o28]], [[5kit]], [[5u2m]], [[5u2n]], [[5upe]], [[5upf]] - hNMPRT + inhibitor<br />
 
-
**[[3dhd]], [[3dhf]] - hNMPRT + pyrophosphate + NMN<BR />
 
-
**[[3dkj]], [[3dkl]] - hNMPRT + benzamide + PRPP<BR />
 
-
}}
 
== References ==
== References ==
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Yeast orotate phosphoribosyltransferase dimer complex with orotate and PRPP (PDB entry 2ps1)

Drag the structure with the mouse to rotate

References

  1. Sculley DG, Dawson PA, Emmerson BT, Gordon RB. A review of the molecular basis of hypoxanthine-guanine phosphoribosyltransferase (HPRT) deficiency. Hum Genet. 1992 Nov;90(3):195-207. PMID:1487231
  2. 2.0 2.1 Gonzalez-Segura L, Witte JF, McClard RW, Hurley TD. Ternary complex formation and induced asymmetry in orotate phosphoribosyltransferase. Biochemistry. 2007 Dec 11;46(49):14075-86. Epub 2007 Nov 20. PMID:18020427 doi:10.1021/bi701023z
  3. Foster AC, Whetsell WO Jr, Bird ED, Schwarcz R. Quinolinic acid phosphoribosyltransferase in human and rat brain: activity in Huntington's disease and in quinolinate-lesioned rat striatum. Brain Res. 1985 Jun 17;336(2):207-14. PMID:3159462
  4. Carter D, Donald RG, Roos D, Ullman B. Expression, purification, and characterization of uracil phosphoribosyltransferase from Toxoplasma gondii. Mol Biochem Parasitol. 1997 Aug;87(2):137-44. PMID:9247925
  5. . PMID:121011881
  6. Castell A, Short FL, Evans GL, Cookson TV, Bulloch EM, Joseph DD, Lee CE, Parker EJ, Baker EN, Lott JS. Substrate capture mechanism of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase provides a mode for inhibition. Biochemistry. 2013 Jan 30. PMID:23363292 doi:http://dx.doi.org/10.1021/bi301387m
  7. Pedreno S, Pisco JP, Larrouy-Maumus G, Kelly G, de Carvalho LP. Mechanism of feedback allosteric inhibition of ATP phosphoribosyltransferase. Biochemistry. 2012 Oct 9;51(40):8027-38. doi: 10.1021/bi300808b. Epub 2012 Sep, 27. PMID:22989207 doi:http://dx.doi.org/10.1021/bi300808b
  8. Galassi L, Di Stefano M, Brunetti L, Orsomando G, Amici A, Ruggieri S, Magni G. Characterization of human nicotinate phosphoribosyltransferase: Kinetic studies, structure prediction and functional analysis by site-directed mutagenesis. Biochimie. 2012 Feb;94(2):300-9. doi: 10.1016/j.biochi.2011.06.033. Epub 2011 Jul, 3. PMID:21742010 doi:http://dx.doi.org/10.1016/j.biochi.2011.06.033
  9. Imai S. Nicotinamide phosphoribosyltransferase (Nampt): a link between NAD biology, metabolism, and diseases. Curr Pharm Des. 2009;15(1):20-8. PMID:19149599
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