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| == Structural highlights == | | == Structural highlights == |
| The structure of the yeast OPRT contains the two reaction products: <scene name='52/525122/Cv/14'>orotate</scene> and <scene name='52/525122/Cv/15'>PRPP</scene><ref name="Gonza" />. <scene name='52/525122/Cv/17'>Mg coordination site</scene>. Water molecules are shown as red spheres. <scene name='52/525122/Cv/16'>Whole binding site</scene>. | | The structure of the yeast OPRT contains the two reaction products: <scene name='52/525122/Cv/14'>orotate</scene> and <scene name='52/525122/Cv/15'>PRPP</scene><ref name="Gonza" />. <scene name='52/525122/Cv/17'>Mg coordination site</scene>. Water molecules are shown as red spheres. <scene name='52/525122/Cv/16'>Whole binding site</scene>. |
- | | |
- | </StructureSection> | |
| | | |
| ==3D structures of phosphoribosyltransferase== | | ==3D structures of phosphoribosyltransferase== |
| + | [[Phosphoribosyltransferase 3D structures]] |
| | | |
- | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
| + | </StructureSection> |
- | {{#tree:id=OrganizedByTopic|openlevels=0|
| + | |
- | | + | |
- | *'''Orotate phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1oro]] - EcOPRT – ''Escherichia coli''<br />
| + | |
- | **[[1j7j]] - StOPRT – ''Salmonella typhimurium''<br />
| + | |
- | **[[2aee]] - OPRT – ''Streptococcus pyogenes''<br />
| + | |
- | **[[3dez]] - OPRT – ''Streptococcus mutans''<br />
| + | |
- | **[[2yzk]] – OPRT – ''Aeropyrum pernix''<br />
| + | |
- | **[[2pry]] - yOPRT – yeast<br />
| + | |
- | **[[3m3h]] - BaOPRT – ''Bacillus anthracis''<br />
| + | |
- | **[[3mjd]] - OPRT – ''Francisella tularensis''<br />
| + | |
- | **[[3n2l]] - VcOPRT – ''Vibrio cholera''<br />
| + | |
- | **[[3qw3]], [[3qw4]] - OPRT – ''Leishmania infantum''<br />
| + | |
- | **[[2p1z]] – OPRT – ''Corynebacterium diphtheriae''<br />
| + | |
- | **[[4fym]] - PfOPRT – ''Plasmodium falciparum''<br />
| + | |
- | **[[4ohc]] – OPRT – ''Burkholderia cenocepacia''<br />
| + | |
- | **[[4paw]] – HpOPRT – ''Helicobacter pylori''<br />
| + | |
- | | + | |
- | *Orotate phosphoribosyltransferase complex
| + | |
- | | + | |
- | **[[1sto]] – StOPRT + OMP<br />
| + | |
- | **[[2prz]] - yOPRT + OMP<br />
| + | |
- | **[[2qcn]], [[2wns]], [[3l0k]], [[3l0n]], [[3mo7]] – hOPRT + UMP derivative<br />
| + | |
- | **[[3mi2]] - hOPRT + pyrazofurin monophosphate<br />
| + | |
- | **[[4hib]], [[4hkp]] - hOPRT + inhibitor<br />
| + | |
- | **[[4rv4]] - BaOPRT + PRPP<BR />
| + | |
- | **[[4wml]], [[4wn3]] - yOPRT + PRPP<BR />
| + | |
- | **[[1opr]], [[1lh0]] - StOPRT + orotate + PRPP<BR />
| + | |
- | **[[2ps1]] - yOPRT + orotate + PRPP<BR />
| + | |
- | **[[5hki]] – MtOPRT + Fe-citrate – ''Mycobacterium tuberculosis'' <br />
| + | |
- | **[[5hkf]] - MtOPRT + PRPP<BR />
| + | |
- | **[[5hkl]] - MtOPRT (mutant) + Pi<BR />
| + | |
- | | + | |
- | *'''Hypoxanthine-guanine phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1nul]], [[1grv]] - EcHPRT <br />
| + | |
- | **[[1dbr]] - TgHPRT – ''Toxoplasma gondii''<br />
| + | |
- | **[[1tc1]] - TcHPRT – ''Trypanosoma cruzi''<br />
| + | |
- | **[[1r3u]] - TteHPRT – ''Thermoanaerobacter tengongensis''<br />
| + | |
- | **[[2geb]] - TteHPRT (mutant) <br />
| + | |
- | **[[1vdm]] - PhHPRT – ''Pyrococcus horikoshii''<br />
| + | |
- | **[[1z7g]] - hHPRT <br />
| + | |
- | **[[3h83]], [[3hvu]], [[3o7m]], [[4qyi]] - BaHPRT<br />
| + | |
- | **[[3acb]] - TtHPRT – ''Thermus thermophilus''<br />
| + | |
- | **[[3ohp]] - VcHPRT <br />
| + | |
- | **[[4lyy]] – HPRT – ''Shewanella pealeana''<br />
| + | |
- | **[[4pfq]] – HPRT – ''Brachybacterium faecium''<br />
| + | |
- | **[[4qri]] – HPRT – ''Leptospira interrogans''<br />
| + | |
- | **[[4rqa]], [[4rqb]] – HPRT – ''Staphylococcus aureus''<br />
| + | |
- | | + | |
- | *Hypoxanthine-guanine phosphoribosyltransferase binary complex
| + | |
- | | + | |
- | **[[1a98]], [[1a97]] - EcHPRT (mutant) + GMP<br />
| + | |
- | **[[1g9s]] - EcHPRT + IMP<BR />
| + | |
- | **[[1g9t]] - EcHPRT + GMP<br />
| + | |
- | **[[1hmp]], [[2vfa]] - hHPRT + GMP<br />
| + | |
- | **[[3gep]], [[3ggj]], [[4jit]], [[4jls]] - hHPRT + guanine derivative<br />
| + | |
- | **[[3ggc]] - hHPRT + hypoxanthine derivative<br />
| + | |
- | **[[4ijq]], [[4rab]], [[4rac]], [[4rad]], [[4ran]], [[4rao]], [[4raq]] - hHPRT + inhibitor<br />
| + | |
- | **[[4kn6]] - hHPRT + antiviral agent<br />
| + | |
- | **[[1hgx]] - HPRT + GMP – ''Tritrichomonas foetus''<br />
| + | |
- | **[[1qk3]] - TgHPRT + GMP<br />
| + | |
- | **[[1qk4]] - TgHPRT + IMP<BR />
| + | |
- | **[[1p19]] - TcHPRT + IMP<BR />
| + | |
- | **[[1p17]] - TcHPRT (mutant) + IMP<BR />
| + | |
- | **[[1yfz]] - TteHPRT + IMP<BR />
| + | |
- | **[[1dqp]] - GiHPRT + imucillin – ''Giardia intestinalis''<br />
| + | |
- | **[[1pzm]] - LtHPRT + GMP – ''Leishmania tarentolae''<br />
| + | |
- | **[[1y0b]] - BsHPRT + GTP – ''Bacillus subtilis''<br />
| + | |
- | **[[2fxv]] - BsHPRT + GMP<br />
| + | |
- | **[[3kb8]] - BaHPRT + GMP<br />
| + | |
- | **[[2jky]], [[2jkz]], [[2xbu]] - yHPRT + GMP<br />
| + | |
- | **[[3acc]] - TtHPRT + GMP<br />
| + | |
- | **[[3acd]] - TtHPRT + IMP<BR />
| + | |
- | **[[1cjb]] - PfHPRT + pyrophosphate <br />
| + | |
- | **[[3ozf]] - PfHPRT + hypoxanthine<br />
| + | |
- | **[[3ozg]] - PfHPRT + inhibitor<br />
| + | |
- | **[[1dqn]] - GiHPRT + transition state analog<br />
| + | |
- | **[[1d6n]] - LdHPRT + AMP derivative<br />
| + | |
- | **[[4z1o]] - SsHPRT + PRPP - ''Sulfolobus solfataricus''<br />
| + | |
- | **[[4zfn]] - SsHPRT + GMP<br />
| + | |
- | | + | |
- | *Hypoxanthine-guanine phosphoribosyltransferase ternary complex
| + | |
- | | + | |
- | **[[1a95]] - EcHPRT + guanine + PRPP derivative<br />
| + | |
- | **[[1a96]] - EcHPRT + xanthine + PRPP derivative<br />
| + | |
- | **[[1bzy]] - hHPRT + inhibitor + guanine derivative<br />
| + | |
- | **[[1tc2]], [[1i0i]], [[1i0l]], [[1i13]], [[1i14]] – TcHPRT + pyrimidine derivative + PRPP derivative<br />
| + | |
- | **[[1p18]] - TcHPRT (mutant) + pyrimidine derivative + PRPP<BR />
| + | |
- | **[[1qk5]] - TgHPRT (mutant) + XMP + pyrophosphate<br />
| + | |
- | **[[1fsg]] - TgHPRT + guanine derivative + PRPP<BR />
| + | |
- | **[[1cjb]] - PfHPRT + pyrophosphate + inhibitor<br />
| + | |
- | | + | |
- | *'''Quinolinic acid phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1o4u]] - TmQAPRT – ''Thermotoga maritima''<br />
| + | |
- | **[[2jbm]], [[5ayx]], [[4kwv]] – hQAPRT<br />
| + | |
- | **[[3c2e]] - yQAPRT <br />
| + | |
- | **[[1qpo]] – MtQAPRT – ''Mycobacterium tuberculosis'' <br />
| + | |
- | | + | |
- | *Quinolinic acid phosphoribosyltransferase complex
| + | |
- | | + | |
- | **[[1qap]] - StQAPRT + quinolinic acid<br />
| + | |
- | **[[1qpr]] - MtQAPRT + PRPP derivative <br />
| + | |
- | **[[1qpn]] – MtQAPRT + nicotinate mononucleotide <br />
| + | |
- | **[[1qpq]] - MtQAPRT + quinolinic acid<br />
| + | |
- | **[[5ayy]] - hQAPRT + quinolinic acid<br />
| + | |
- | **[[3c2o]] - yQAPRT + quinolinic acid<br />
| + | |
- | **[[3c2f]] - yQAPRT + PRPP<BR />
| + | |
- | **[[3c2r]] - yQAPRT + inhibitor<br />
| + | |
- | **[[3c2v]] - yQAPRT + inhibitor + PRPP<BR />
| + | |
- | **[[4i9a]] – QAPRT + nicotinate mononucleotide – pig<br />
| + | |
- | **[[2b7n]] – HpQAPRT + quinolinic acid <br />
| + | |
- | **[[4kww]] – hQAPRT + phthalate <br />
| + | |
- | **[[2b7p]] – HpQAPRT + phthalate <br />
| + | |
- | **[[2b7q]] – HpQAPRT + nicotinate mononucleotide <br />
| + | |
- | **[[5ayz]] – hQAPRT + nicotinate mononucleotide <br />
| + | |
- | | + | |
- | *'''Uracil phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1w30]], [[5e38]] - MtUPRT <br />
| + | |
- | **[[1bd3]] - TgUPRT (mutant) <br />
| + | |
- | **[[1v9s]] - TtUPRT <br />
| + | |
- | **[[2e55]] - UPRT – ''Aquifex aeolicus'' <br />
| + | |
- | **[[2ehj]] - EcUPRT <br />
| + | |
- | **[[3dmp]] - UPRT – ''Burkholderia pseudomallei''
| + | |
- | | + | |
- | *Uracil phosphoribosyltransferase complex
| + | |
- | | + | |
- | **[[1upu]] - TgUPRT (mutant) + UMP<br />
| + | |
- | **[[1o5o]] - TmUPRT + UMP<br />
| + | |
- | **[[1jlr]] - TgUPRT (mutant) + GTP<br />
| + | |
- | **[[1bd4]] - TgUPRT (mutant) + uracil<br />
| + | |
- | **[[1upf]] - TgUPRT (mutant) + fluorouracil<br />
| + | |
- | **[[1i5e]], [[2igb]] - UPRT + UMP – ''Bacillus caldolyticus''<br />
| + | |
- | **[[1jls]] - TgUPRT (mutant) + uracil + PRPP<BR />
| + | |
- | **[[1vst]], [[3g6w]] - SsUPRT + GTP + PRPP
| + | |
- | | + | |
- | *'''Adenine phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1qcc]], [[1qcd]] - LdAPRT – ''Leishmania donovani''<br />
| + | |
- | **[[1g2p]], [[1g2q]] – yAPRT <br />
| + | |
- | **[[2dy0]] - EcAPRT <br />
| + | |
- | **[[4lza]] – APRT – ''Thermoanaerobacter pseudethanolicus''<br />
| + | |
- | **[[4m0k]] – APRT – ''Rhodothermus marinus''<br />
| + | |
- | **[[4mb6]] – YpAPRT – ''Yersinia pseudotuberculosis''<br />
| + | |
- | **[[4trb]] – SsAPRT <br />
| + | |
- | | + | |
- | *Adenine phosphoribosyltransferase complex
| + | |
- |
| + | |
- | **[[1qb7]] - LdAPRT + adenine<br />
| + | |
- | **[[4trc]] - SsAPRT + adenine<br />
| + | |
- | **[[4ts5]] - SsAPRT + AMP<br />
| + | |
- | **[[1qb8]] - LdAPRT + AMP<br />
| + | |
- | **[[1ore]], [[1zn8]], [[1zn9]] - hAPRT + AMP<br />
| + | |
- | **[[4x44]], [[4x45]] - hAPRT (mutant) + AMP - human<br />
| + | |
- | **[[5b6h]] - YpAPRT + AMP <br />
| + | |
- | **[[1mzv]] - LtAPRT + AMP<br />
| + | |
- | **[[4ts7]] - SsAPRT + ADP<br />
| + | |
- | **[[1zn7]] - hHGPRT + adenine + PRPP<BR />
| + | |
- | **[[1l1q]] - GiAPRT + adenine derivative<br />
| + | |
- | **[[1l1r]] - GiAPRT + adenine derivative + PRPP<BR />
| + | |
- | | + | |
- | *'''Nicotinate mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1l4b]] – StNN:DBI PRT <br />
| + | |
- | **[[4kqh]] - StNN:DBI PRT (mutant)<br />
| + | |
- | **[[1wx1]] – TtNN:DBI PRT <br />
| + | |
- | **[[3u4g]] – PhNN:DBI PRT
| + | |
- | | + | |
- | *Nicotinate mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase complex
| + | |
- | | + | |
- | **[[1jh8]], [[4kqf]] – StNN:DBI PRT + adenine<br />
| + | |
- | **[[1l4e]], [[1l4f]], [[1l4g]], [[1l4h]], [[1l4k]], [[1l4l]], [[1l4m]], [[1l4n]], [[1l5f]], [[1l5k]], [[1l5l]], [[1l5m]], [[1l5n]], [[1l5o]] - StNN:DBI PRT + product-aldimine complex<br />
| + | |
- | **[[1jha]] – StNN:DBI PRT + AMP + nicotinate<br />
| + | |
- | **[[4kqi]], [[1dov]] - StNN:DBI PRT (mutant) + nicotinate + α-ribazole phosphate<br />
| + | |
- | **[[1jhm]] – StNN:DBI PRT + benzimidazole<br />
| + | |
- | **[[1jho]] – StNN:DBI PRT + NaMN + benzimidazole<br />
| + | |
- | **[[1jhp]], [[1d0s]] – StNN:DBI PRT + benzimidazole derivative<br />
| + | |
- | **[[1jhq]] - StNN:DBI PRT + NaMN + benzimidazole derivative<br />
| + | |
- | **[[1jhr]] - StNN:DBI PRT + NaMN + hydroxypurine<br />
| + | |
- | **[[1jhu]] - StNN:DBI PRT + cresol<br />
| + | |
- | **[[4kqk]] - StNN:DBI PRT (mutant) + cresol<br />
| + | |
- | **[[1jhv]] - StNN:DBI PRT + nicotinate + cresol<br />
| + | |
- | **[[1jhx]] - StNN:DBI PRT + phenol<br />
| + | |
- | **[[1jhy]] - StNN:DBI PRT + phenol + nicotinate<br />
| + | |
- | **[[4kqj]] - StNN:DBI PRT (mutant) + NaMN + cresol<br />
| + | |
- | **[[4kqg]] - StNN:DBI PRT (mutant) + cobamide<br />
| + | |
- | | + | |
- | *'''Anthranilate phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1o17]] - SsANPRT <br />
| + | |
- | **[[1khd]] – PcANPRT – ''Pectobacterium carotovorum''<br />
| + | |
- | **[[1v8g]], [[2elc]] - TtANPRT <br />
| + | |
- | **[[1vqu]] - ANPRT – Nostoc<br />
| + | |
- | **[[3qr9]], [[5c2l]] – MtANPRT<br />
| + | |
- | **[[4x5a]] - MtANPRT (mutant) <BR />
| + | |
- | **[[4hkm]] - ANPRT – ''Xanthomonas campestris''<br />
| + | |
- | **[[4gtn]] – AcANPRT – ''Acinetobacter''<br />
| + | |
- | | + | |
- | *Anthranilate phosphoribosyltransferase complex containing anthranilate
| + | |
- | | + | |
- | **[[4owm]], [[4own]], [[4owo]], [[4owq]], [[4ows]], [[4owu]], [[4n5v]], 4n93]] - MtANPRT + PRPP + anthranilate derivative<BR />
| + | |
- | **[[4ij1]], [[4m0r]], [[4owv]], [[4n8q]] - MtANPRT + anthranilate derivative <br />
| + | |
- | **[[4x5d]] - MtANPRT (mutant) + anthranilate<BR />
| + | |
- | **[[4x5e]] - MtANPRT (mutant) + anthranilate + POP<BR />
| + | |
- | **[[1zyk]] - SsANPRT + anthranilate + PRPP<BR />
| + | |
- | **[[4giu]], [[4gkm]]- PfANPRT + anthranilate derivative + PRPP<br />
| + | |
- | **[[4yi7]] - AcMtANPRT + anthranilate<BR />
| + | |
- | | + | |
- | *Anthranilate phosphoribosyltransferase other complexes
| + | |
- |
| + | |
- | **[[1kgz]] - PcANPRT + PRPP<BR />
| + | |
- | **[[1zvw]], [[5byt]], [[5c1r]], [[5c7s]] - MtANPRT + PRPP<BR />
| + | |
- | **[[4x58]], [[4x59]], [[4x5b]] - MtANPRT (mutant) + PRPP<BR />
| + | |
- | **[[4x5c]] - MtANPRT (mutant) + PRPP + POP<BR />
| + | |
- | **[[1zxy]] - SsANPRT + PRPP<BR />
| + | |
- | **[[3gbr]] - SsANPRT (mutant) + PRPP<BR />
| + | |
- | **[[1gxb]] - SsANPRT + POP<br />
| + | |
- | **[[2gvq]] - SsANPRT + anthranilate<br />
| + | |
- | **[[4ztv]], [[5bne]], [[5bo2]], [[5bo3]] - MtANPRT + inhibitor <BR />
| + | |
- | **[[3qqs]], [[3qs8]], [[3qsa]], [[3r6c]], [[3r88]], [[3twp]], [[3uu1]], [[4zof]], [[4zoj]], [[4zok]] - MtANPRT + inhibitor + PRPP<BR />
| + | |
- | | + | |
- | *'''ATP phosphoribosyltransferase''' See [[ATP Phosphoribosyl Transferase]]
| + | |
- | | + | |
- | *'''Nicotinate phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[1vlp]] - yNIPRT <br />
| + | |
- | **[[1ybe]] - NIPRT – ''Agrobacterium tumefaciens''<br />
| + | |
- | **[[1yir]] - NIPRT – ''Pseudomonas aeruginosa''<br />
| + | |
- | **[[1ytd]], [[2i1o]] - TaNIPRT – ''Thermoplasma acidophilum''<br />
| + | |
- | **[[2bpq]] - MtNIPRT <br />
| + | |
- | **[[2im5]] - NIPRT – ''Porphyromonas gingivalis''<br />
| + | |
- | **[[3os4]] - NIPRT – ''Yersinia pestis''<br />
| + | |
- | **[[4hl7]] - VcNIPRT <br />
| + | |
- | **[[4yub]] - hNIPRT <br />
| + | |
- | | + | |
- | *Nicotinate phosphoribosyltransferase complex
| + | |
- | | + | |
- | **[[1yte]] - TaNIPRT + PRPP<BR />
| + | |
- | **[[1ytk]] - TaNIPRT + NAMN<br />
| + | |
- | **[[4mzy]] – NIPRT + malonate + Pi<br />
| + | |
- | | + | |
- | *'''Nicotinamide phosphoribosyltransferase'''
| + | |
- | | + | |
- | **[[2gvl]] - mNMPRT – mouse<br />
| + | |
- | **[[2g95]] - NMPRT - rat<br />
| + | |
- | **[[2h3b]] – mNMPRT (mutant) <br />
| + | |
- | **[[2e5b]] – hNMPRT
| + | |
| | | |
- | *Nicotinamide phosphoribosyltransferase complex | |
- | | |
- | **[[2h3d]] - mNMPRT + NMN<BR /> | |
- | **[[2gvg]] - hNMPRT + NMN<BR /> | |
- | **[[2g96]] - rNMPRT + NMN<BR /> | |
- | **[[2g97]], [[3g8e]] - rNMPRT + FK-866<br /> | |
- | **[[2gvj]] - hNMPRT + FK-866<br /> | |
- | **[[2e5c]] - hNMPRT + PRPP<BR /> | |
- | **[[2e5d]] - hNMPRT + nicotinamide<br /> | |
- | **[[3dgr]] - hNMPRT + ADP analog<br /> | |
- | **[[4jnm]], [[4jr5]], [[4kfn]], [[4kfo]], [[4kfp]], [[4lts]], [[4lv9]], [[4lva]], [[4lvb]], [[4lvd]], [[4lvf]], [[4lvg]], [[4lww]], [[4m6p]], [[4m6q]], [[4n9b]], [[4n9c]], [[4n9d]], [[4n9e]], [[4l4l]], [[4l4m]], [[4o0z]], [[4o10]], [[4o12]], [[4o13]], [[4o14]], [[4o15]], [[4o16]], [[4o17]], [[4o18]], [[4o19]], [[4o1a]], [[4o1b]], [[4o1c]], [[4o1d]], [[4wq6]], [[4o28]], [[5kit]], [[5u2m]], [[5u2n]], [[5upe]], [[5upf]] - hNMPRT + inhibitor<br /> | |
- | **[[3dhd]], [[3dhf]] - hNMPRT + pyrophosphate + NMN<BR /> | |
- | **[[3dkj]], [[3dkl]] - hNMPRT + benzamide + PRPP<BR /> | |
- | }} | |
| == References == | | == References == |
| <references/> | | <references/> |
| [[Category:Topic Page]] | | [[Category:Topic Page]] |