User:Kasha Maslowski/Sandbox 2
From Proteopedia
< User:Kasha Maslowski(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
<StructureSection load='' size='600' side='right' caption='Just a little droplet of water' scene='82/822541/Water_droplet/2'> | <StructureSection load='' size='600' side='right' caption='Just a little droplet of water' scene='82/822541/Water_droplet/2'> | ||
==Instructions== | ==Instructions== | ||
| - | + | Wait for the 3D representation of a droplet of water to load to the right. Once it has loaded, practice interacting with the model. The following instruction were written using a Chromebook, but will will most likely work on any device with a track pad. | |
| - | <scene name='82/822541/Water_droplet/2'> | + | *Click and hold the trackpad with one finger while dragging across the trackpad to rotate the 3D model. |
| + | *Trace two fingers at once across the trackpad to zoom in and out. | ||
| + | *Clicking the popup button will open a popup window of the 3D model that you can resize. | ||
| + | |||
| + | When you are ready, click on the unknown molecules below. It may take a moment for the model to load. If at any time you would like to see the water droplet model again | ||
| + | <scene name='82/822541/Water_droplet/2'>click here to reload it.</scene><ref name="angel">Herráez, Angel, and Michael Bruist. “Intermolecular Hydrogen Bonds in Liquid Water and in Ice.” Structure of Water and Ice, biomodel.uah.es/en/water/p1.htm | [http://biomodel.uah.es/en/water/p1.htm]</ref> | ||
==Set of Unknown Molecules== | ==Set of Unknown Molecules== | ||
| + | |||
| + | The models in the table below are a random assortment of different biologically important molecules. Please note that molecules highlighted in yellow have many more repeated units than what is shown in the models. Molecule C as shown has two separate subunits, | ||
{| class="wikitable" | {| class="wikitable" | ||
|- | |- | ||
| - | | <scene name='82/822541/Molecule_a/2'>Molecule A</scene><ref name="porto">Molecular models in this page were created or modified from [[PDB files]] by [[User:Alejandro Porto|Alejandro Porto]] using the tool JSME Molecular Editor [http://biomodel.uah.es/en/DIY/JSME/draw.es.htm]</ref> | + | | style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_a/2'>Molecule A</scene><ref name="porto">Molecular models in this page were created or modified from [[PDB files]] by [[User:Alejandro Porto|Alejandro Porto]] using the tool JSME Molecular Editor [http://biomodel.uah.es/en/DIY/JSME/draw.es.htm]</ref> |
| <scene name='82/822541/Molecule_b/1'>Molecule B</scene><ref name="porto" /> | | <scene name='82/822541/Molecule_b/1'>Molecule B</scene><ref name="porto" /> | ||
| <scene name='82/822541/Molecule_c/14'>Molecule C</scene> | | <scene name='82/822541/Molecule_c/14'>Molecule C</scene> | ||
| <scene name='82/822541/Molecule_d2/1'>Molecule D</scene> | | <scene name='82/822541/Molecule_d2/1'>Molecule D</scene> | ||
|- | |- | ||
| - | | <scene name='82/822541/Molecule_e/1'>Molecule E</scene> | + | | style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_e/1'>Molecule E</scene> |
| <scene name='82/822541/Molecule_f/1'>Molecule F</scene> | | <scene name='82/822541/Molecule_f/1'>Molecule F</scene> | ||
| <scene name='82/822541/Molecule_g/1'>Molecule G</scene><ref name="porto" /> | | <scene name='82/822541/Molecule_g/1'>Molecule G</scene><ref name="porto" /> | ||
| - | | <scene name='82/822541/Molecule_h/1'>Molecule H</scene><ref name="porto" /> | + | | style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_h/1'>Molecule H</scene><ref name="porto" /> |
|- | |- | ||
| <scene name='82/822541/Molecule_i/1'>Molecule I</scene> | | <scene name='82/822541/Molecule_i/1'>Molecule I</scene> | ||
| - | | <scene name='82/822541/Molecule_j3/2'>Molecule J</scene> | + | | style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_j3/2'>Molecule J</scene> |
| <scene name='82/822541/Molecule_k/1'>Molecule K</scene> | | <scene name='82/822541/Molecule_k/1'>Molecule K</scene> | ||
| <scene name='82/822541/Molecule_l/1'>Molecule L</scene> | | <scene name='82/822541/Molecule_l/1'>Molecule L</scene> | ||
|- | |- | ||
| <scene name='82/822541/Molecule_m/2'>Molecule M</scene> | | <scene name='82/822541/Molecule_m/2'>Molecule M</scene> | ||
| - | | <scene name='82/822541/Molecule_n/3'>Molecule N</scene><ref name="biot">From Biotopics website[https://www.biotopics.co.uk/jsmol/glycogen.html]</ref> | + | | style="background-color:#fcff2f;" | <scene name='82/822541/Molecule_n/3'>Molecule N</scene><ref name="biot">From Biotopics website[https://www.biotopics.co.uk/jsmol/glycogen.html]</ref> |
| <scene name='82/822541/Molecule_o/1'>Molecule O</scene><ref name="porto" /> | | <scene name='82/822541/Molecule_o/1'>Molecule O</scene><ref name="porto" /> | ||
| <scene name='82/822541/Molecule_p/1'>Molecule P</scene> | | <scene name='82/822541/Molecule_p/1'>Molecule P</scene> | ||
|} | |} | ||
| + | |||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
| - | * | ||
<references/> | <references/> | ||
Current revision
| |||||||||||
References
- ↑ Herráez, Angel, and Michael Bruist. “Intermolecular Hydrogen Bonds in Liquid Water and in Ice.” Structure of Water and Ice, biomodel.uah.es/en/water/p1.htm | [1]
- ↑ 2.0 2.1 2.2 2.3 2.4 Molecular models in this page were created or modified from PDB files by Alejandro Porto using the tool JSME Molecular Editor [2]
- ↑ From Biotopics website[3]
