This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c01

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_3c01", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
Current revision (09:32, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c01.jpg|left|200px]]
 
-
<!--
+
==Crystal structural of native SpaS C-terminal domain==
-
The line below this paragraph, containing "STRUCTURE_3c01", creates the "Structure Box" on the page.
+
<StructureSection load='3c01' size='340' side='right'caption='[[3c01]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c01]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C01 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3c01| PDB=3c01 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c01 OCA], [https://pdbe.org/3c01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c01 RCSB], [https://www.ebi.ac.uk/pdbsum/3c01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c01 ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal structural of native SpaS C-terminal domain'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SPAS_SALTY SPAS_SALTY] Involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells.
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3C01 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C01 OCA].
+
Check<jmol>
-
[[Category: Protein complex]]
+
<jmolCheckbox>
-
[[Category: Salmonella typhimurium]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c0/3c01_consurf.spt"</scriptWhenChecked>
-
[[Category: Deng, W.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Finlay, B B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hai, V N.]]
+
</jmolCheckbox>
-
[[Category: Heather, B F.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c01 ConSurf].
-
[[Category: Samuel, I M.]]
+
<div style="clear:both"></div>
-
[[Category: Strynadka, N C.J.]]
+
__TOC__
-
[[Category: Vuckovic, M.]]
+
</StructureSection>
-
[[Category: Zarivach, R.]]
+
[[Category: Large Structures]]
-
[[Category: Auto cleavage protein]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Escu]]
+
[[Category: Deng W]]
-
[[Category: Flagella]]
+
[[Category: Felise HB]]
-
[[Category: Inner membrane]]
+
[[Category: Finlay BB]]
-
[[Category: Intein]]
+
[[Category: Miller SI]]
-
[[Category: Membrane]]
+
[[Category: Nguyen HV]]
-
[[Category: Membrane protein]]
+
[[Category: Strynadka NCJ]]
-
[[Category: Protein transport]]
+
[[Category: Vuckovic M]]
-
[[Category: T3ss]]
+
[[Category: Zarivach R]]
-
[[Category: Transmembrane]]
+
-
[[Category: Virulence]]
+
-
[[Category: Yscu]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 24 09:51:15 2008''
+

Current revision

Crystal structural of native SpaS C-terminal domain

PDB ID 3c01

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools