This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cup

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:33, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='3cup' size='340' side='right'caption='[[3cup]], [[Resolution|resolution]] 3.09&Aring;' scene=''>
<StructureSection load='3cup' size='340' side='right'caption='[[3cup]], [[Resolution|resolution]] 3.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3cup]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CUP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CUP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3cup]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CUP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CUP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.09&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cup OCA], [http://pdbe.org/3cup PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cup RCSB], [http://www.ebi.ac.uk/pdbsum/3cup PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cup ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cup OCA], [https://pdbe.org/3cup PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cup RCSB], [https://www.ebi.ac.uk/pdbsum/3cup PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cup ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HA2D_MOUSE HA2D_MOUSE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 22:
==See Also==
==See Also==
-
*[[Major histocompatibility complex|Major histocompatibility complex]]
+
*[[MHC 3D structures|MHC 3D structures]]
 +
*[[MHC II 3D structures|MHC II 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Corper, A L]]
+
[[Category: Mus musculus]]
-
[[Category: Teyton, L]]
+
[[Category: Corper AL]]
-
[[Category: Wilson, I A]]
+
[[Category: Teyton L]]
-
[[Category: Yoshida, K]]
+
[[Category: Wilson IA]]
-
[[Category: Glycoprotein]]
+
[[Category: Yoshida K]]
-
[[Category: Histocompatability antigen]]
+
-
[[Category: I-ag7]]
+
-
[[Category: Immune response]]
+
-
[[Category: Immune system]]
+
-
[[Category: Membrane]]
+
-
[[Category: Mhc class ii]]
+
-
[[Category: Mhc ii]]
+
-
[[Category: Transmembrane]]
+

Current revision

Crystal structure of the MHC class II molecule I-Ag7 in complex with the peptide GAD221-235

PDB ID 3cup

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools