User:Kasha Maslowski/Biological Molecule Examples
From Proteopedia
< User:Kasha Maslowski(Difference between revisions)
(New page: <StructureSection load='' size='600' side='right' caption='Just a little droplet of water' scene='82/822541/Water_droplet/2'> ==Instructions== Wait for the 3D representation of a droplet o...) |
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*Click and hold the trackpad with one finger while dragging across the trackpad to rotate the 3D model. | *Click and hold the trackpad with one finger while dragging across the trackpad to rotate the 3D model. | ||
*Trace two fingers at once across the trackpad to zoom in and out. | *Trace two fingers at once across the trackpad to zoom in and out. | ||
| + | *Click and hold the alt button while clicking and hold the trackpad with one finger while dragging across the trackpad to spin the 3D model. | ||
*Clicking the popup button will open a popup window of the 3D model that you can resize. | *Clicking the popup button will open a popup window of the 3D model that you can resize. | ||
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| + | ===Advanced Options=== | ||
| + | *Double click the scene, move the cursor to another location, then double click again to display the distance between two points. | ||
| + | *Double click the scene, move the cursor to another location, click once, move the cursor to yet another location, then double click to display the angle between two lines. | ||
When you are ready, click on the unknown molecules below. It may take a moment for the model to load. If at any time you would like to see the water droplet model again | When you are ready, click on the unknown molecules below. It may take a moment for the model to load. If at any time you would like to see the water droplet model again | ||
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==Set of Unknown Molecules== | ==Set of Unknown Molecules== | ||
| - | The models in the table below are a random assortment of different biologically important molecules. Please note that molecules highlighted in yellow have many more repeated units than what is shown in the models. | + | The models in the table below are a random assortment of different biologically important molecules. Please note that molecules highlighted in yellow have many more repeated units than what is shown in the models. Atoms are colored according to the CPK standard. Hydrogen bonding is indicated by dashed lines, and are usually colored cyan (light blue). |
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{| class="wikitable" | {| class="wikitable" | ||
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| - | | style="background-color:#fcff2f;" | <scene name='82/ | + | | style="background-color:#fcff2f;" | <scene name='82/823078/Molecule_a/1'>Molecule A</scene><ref name="theis">Molecular models in this page were created or modified from [[PDB files]] by [[User:Karsten Theis|Karsten Theis]] using cellulose builder (http://cces-sw.iqm.unicamp.br/cces/admin/cellulose</ref> |
| - | | <scene name='82/822541/Molecule_b/1'>Molecule B</scene><ref name="porto" /> | + | | <scene name='82/822541/Molecule_b/1'>Molecule B</scene><ref name="porto">Molecular models in this page were created or modified from [[PDB files]] by [[User:Alejandro Porto|Alejandro Porto]] using the tool JSME Molecular Editor [http://biomodel.uah.es/en/DIY/JSME/draw.es.htm]</ref> |
| <scene name='82/822541/Molecule_c/14'>Molecule C</scene> | | <scene name='82/822541/Molecule_c/14'>Molecule C</scene> | ||
| <scene name='82/822541/Molecule_d2/1'>Molecule D</scene> | | <scene name='82/822541/Molecule_d2/1'>Molecule D</scene> | ||
Current revision
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References
- ↑ Herráez, Angel, and Michael Bruist. “Intermolecular Hydrogen Bonds in Liquid Water and in Ice.” Structure of Water and Ice, biomodel.uah.es/en/water/p1.htm | [1]
- ↑ Molecular models in this page were created or modified from PDB files by Karsten Theis using cellulose builder (http://cces-sw.iqm.unicamp.br/cces/admin/cellulose
- ↑ 3.0 3.1 3.2 3.3 Molecular models in this page were created or modified from PDB files by Alejandro Porto using the tool JSME Molecular Editor [2]
- ↑ From Biotopics website[3]
