3c6r

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[[Image:3c6r.jpg|left|200px]]
 
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==Low pH Immature Dengue Virus==
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The line below this paragraph, containing "STRUCTURE_3c6r", creates the "Structure Box" on the page.
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<SX load='3c6r' size='340' side='right' viewer='molstar' caption='[[3c6r]], [[Resolution|resolution]] 25.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3c6r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Dengue_virus_2_Thailand/PUO-218/1980 Dengue virus 2 Thailand/PUO-218/1980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C6R FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 25&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6r OCA], [https://pdbe.org/3c6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c6r RCSB], [https://www.ebi.ac.uk/pdbsum/3c6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c6r ProSAT]</span></td></tr>
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{{STRUCTURE_3c6r| PDB=3c6r | SCENE= }}
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</table>
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== Function ==
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'''Low pH Immature Dengue Virus'''
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[https://www.uniprot.org/uniprot/POLG_DEN2U POLG_DEN2U] prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response. Soluble and membrane-associated NS1 may activate human complement and induce host vascular leakage. This effect might explain the clinical manifestations of dengue hemorrhagic fever and dengue shock syndrome (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==Overview==
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Check<jmol>
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Intracellular cleavage of immature flaviviruses is a critical step in assembly that generates the membrane fusion potential of the E glycoprotein. With cryo-electron microscopy we show that the immature dengue particles undergo a reversible conformational change at low pH that renders them accessible to furin cleavage. At a pH of 6.0, the E proteins are arranged in a herringbone pattern with the pr peptides docked onto the fusion loops, a configuration similar to that of the mature virion. After cleavage, the dissociation of pr is pH-dependent, suggesting that in the acidic environment of the trans-Golgi network pr is retained on the virion to prevent membrane fusion. These results suggest a mechanism by which flaviviruses are processed and stabilized in the host cell secretory pathway.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c6/3c6r_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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3C6R is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6R OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==Reference==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c6r ConSurf].
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Structure of the immature dengue virus at low pH primes proteolytic maturation., Yu IM, Zhang W, Holdaway HA, Li L, Kostyuchenko VA, Chipman PR, Kuhn RJ, Rossmann MG, Chen J, Science. 2008 Mar 28;319(5871):1834-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18369148 18369148]
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<div style="clear:both"></div>
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[[Category: Dengue virus 2]]
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__TOC__
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[[Category: Protein complex]]
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</SX>
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[[Category: Chen, J.]]
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[[Category: Dengue virus 2 Thailand/PUO-218/1980]]
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[[Category: Chipman, P R.]]
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[[Category: Large Structures]]
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[[Category: Holdway, H A.]]
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[[Category: Chen J]]
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[[Category: Kostyuchenko, V A.]]
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[[Category: Chipman PR]]
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[[Category: Kuhn, R J.]]
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[[Category: Holdway HA]]
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[[Category: Li, L.]]
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[[Category: Kostyuchenko VA]]
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[[Category: Rossmann, M G.]]
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[[Category: Kuhn RJ]]
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[[Category: Yu, I.]]
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[[Category: Li L]]
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[[Category: Zhang, W.]]
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[[Category: Rossmann MG]]
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[[Category: Capsid protein]]
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[[Category: Yu I]]
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[[Category: Cleavage on pair of basic residue]]
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[[Category: Zhang W]]
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[[Category: Core protein]]
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[[Category: Dengue]]
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[[Category: Endoplasmic reticulum]]
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[[Category: Envelope protein]]
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[[Category: Glycoprotein]]
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[[Category: Icosahedral virus]]
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[[Category: Immature]]
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[[Category: Membrane]]
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[[Category: Prm]]
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[[Category: Secreted]]
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[[Category: Transmembrane]]
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[[Category: Virion]]
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[[Category: Virus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 24 09:52:27 2008''
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Current revision

Low pH Immature Dengue Virus

3c6r, resolution 25.00Å

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