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| | ==Solution structure of AhPDF1 from Arabidopsis halleri== | | ==Solution structure of AhPDF1 from Arabidopsis halleri== |
| - | <StructureSection load='2m8b' size='340' side='right'caption='[[2m8b]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''> | + | <StructureSection load='2m8b' size='340' side='right'caption='[[2m8b]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2m8b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Araha Araha]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2M8B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2M8B FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2m8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_halleri Arabidopsis halleri]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2M8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2M8B FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2m8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2m8b OCA], [http://pdbe.org/2m8b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2m8b RCSB], [http://www.ebi.ac.uk/pdbsum/2m8b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2m8b ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2m8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2m8b OCA], [https://pdbe.org/2m8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2m8b RCSB], [https://www.ebi.ac.uk/pdbsum/2m8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2m8b ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q29SA6_ARAHA Q29SA6_ARAHA] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Araha]] | + | [[Category: Arabidopsis halleri]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Landon, C]] | + | [[Category: Landon C]] |
| - | [[Category: Meindre, F]] | + | [[Category: Meindre F]] |
| - | [[Category: Paquet, F]] | + | [[Category: Paquet F]] |
| - | [[Category: Disulfide bridge]]
| + | |
| - | [[Category: Csab]]
| + | |
| - | [[Category: Plant defensin]]
| + | |
| - | [[Category: Plant protein]]
| + | |
| Structural highlights
Function
Q29SA6_ARAHA
Publication Abstract from PubMed
Plant defensins (PDF) are cysteine-rich peptides that are major actors in the innate immunity in plants. Besides their antifungal activity, some PDF such as Arabidopsis halleri PDF1.1b confer zinc tolerance in plants. Here we present (i) an efficient protocol for the production of AhPDF1.1b by solid-phase peptide synthesis followed by controlled oxidative folding to obtain the highly pure native form of the defensin and (ii) the three-dimensional (3D) nuclear magnetic resonance structure of AhPDF1.1b, the first 3D structure of plant defensin obtained with a synthetic peptide. Its fold is organized around the typical cysteine-stabilized alpha-helix beta-sheet motif and contains the gamma-core motif involved in the antifungal activity of all plant defensins. On the basis of our structural analysis of AhPDF1 defensins combined with previous biological data for antifungal and zinc tolerance activities, we established the essential role of cis-Pro41 within the gamma-core. In fact, the four consecutive residues (Val39-Phe40-Pro41-Ala42) are strictly conserved for plant defensins able to tolerate zinc. We hypothesized that structural and/or dynamic features of this sequence are related to the ability of the defensin to chelate zinc.
The nuclear magnetic resonance solution structure of the synthetic AhPDF1.1b plant defensin evidences the structural feature within the gamma-motif.,Meindre F, Lelievre D, Loth K, Mith O, Aucagne V, Berthomieu P, Marques L, Delmas AF, Landon C, Paquet F Biochemistry. 2014 Dec 16;53(49):7745-54. doi: 10.1021/bi501285k. Epub 2014 Dec, 5. PMID:25419866[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Meindre F, Lelievre D, Loth K, Mith O, Aucagne V, Berthomieu P, Marques L, Delmas AF, Landon C, Paquet F. The nuclear magnetic resonance solution structure of the synthetic AhPDF1.1b plant defensin evidences the structural feature within the gamma-motif. Biochemistry. 2014 Dec 16;53(49):7745-54. doi: 10.1021/bi501285k. Epub 2014 Dec, 5. PMID:25419866 doi:http://dx.doi.org/10.1021/bi501285k
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