6hdd
From Proteopedia
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==OBP chaperonin in the nucleotide-free state== | ==OBP chaperonin in the nucleotide-free state== | ||
- | < | + | <SX load='6hdd' size='340' side='right' viewer='molstar' caption='[[6hdd]], [[Resolution|resolution]] 4.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6hdd]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HDD OCA]. For a <b>guided tour on the structure components</b> use [http:// | + | <table><tr><td colspan='2'>[[6hdd]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens_bacteriophage_obp Pseudomonas fluorescens bacteriophage obp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HDD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6HDD FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http:// | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">OBP_246 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1124849 Pseudomonas fluorescens bacteriophage OBP])</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6hdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hdd OCA], [http://pdbe.org/6hdd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hdd RCSB], [http://www.ebi.ac.uk/pdbsum/6hdd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hdd ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Chaperonins are ubiquitously present protein complexes, which assist the proper folding of newly synthesized proteins and prevent aggregation of denatured proteins in an ATP-dependent manner. They are classified into group I (bacterial, mitochondrial, chloroplast chaperonins) and group II (archaeal and eukaryotic cytosolic variants). However, both of these groups do not include recently discovered viral chaperonins. Here, we solved the symmetry-free cryo-EM structures of a single-ring chaperonin encoded by the gene 246 of bacteriophage OBP Pseudomonas fluorescens, in the nucleotide-free, ATPgammaS-, and ADP-bound states, with a resolution of 4.3A, 5.0A, and 6A, respectively. The structure of OBP chaperonin reveals a unique subunit arrangement, with three subunits pairs and one unpaired subunit. Each pair combines subunits in two possible conformations, differing in nucleotide-binding affinity. Binding of nucleotides result in the increase of subunits' conformational variability. Due to its unique structural and functional features, OBP chaperonin can represent a new group. 148 words. | ||
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+ | Cryo-EM reveals an asymmetry in a novel single-ring viral chaperonin.,Stanishneva-Konovalova TB, Semenyuk PI, Kurochkina LP, Pichkur EB, Vasilyev AL, Kovalchuk MV, Kirpichnikov MP, Sokolova OS J Struct Biol. 2019 Dec 20:107439. doi: 10.1016/j.jsb.2019.107439. PMID:31870903<ref>PMID:31870903</ref> | ||
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+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6hdd" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
- | </ | + | </SX> |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Pseudomonas fluorescens bacteriophage obp]] | ||
[[Category: Semenyuk, P I]] | [[Category: Semenyuk, P I]] | ||
[[Category: Sokolova, O S]] | [[Category: Sokolova, O S]] |
Current revision
OBP chaperonin in the nucleotide-free state
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