This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4d6f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:21, 20 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4d6f' size='340' side='right'caption='[[4d6f]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
<StructureSection load='4d6f' size='340' side='right'caption='[[4d6f]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4d6f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_sp3-bs71 Streptococcus pneumoniae sp3-bs71]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D6F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D6F FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4d6f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_SP3-BS71 Streptococcus pneumoniae SP3-BS71]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D6F FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4d6c|4d6c]], [[4d6d|4d6d]], [[4d6e|4d6e]], [[4d6g|4d6g]], [[4d6h|4d6h]], [[4d6i|4d6i]], [[4d6j|4d6j]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Blood-group-substance_endo-1,4-beta-galactosidase Blood-group-substance endo-1,4-beta-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.102 3.2.1.102] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d6f OCA], [https://pdbe.org/4d6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d6f RCSB], [https://www.ebi.ac.uk/pdbsum/4d6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d6f ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d6f OCA], [http://pdbe.org/4d6f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d6f RCSB], [http://www.ebi.ac.uk/pdbsum/4d6f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4d6f ProSAT]</span></td></tr>
+
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 22: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Blood-group-substance endo-1,4-beta-galactosidase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Streptococcus pneumoniae sp3-bs71]]
+
[[Category: Streptococcus pneumoniae SP3-BS71]]
-
[[Category: Boraston, A B]]
+
[[Category: Boraston AB]]
-
[[Category: Chapanian, R]]
+
[[Category: Chapanian R]]
-
[[Category: Constantinescu, I]]
+
[[Category: Constantinescu I]]
-
[[Category: Higgins, M A]]
+
[[Category: Higgins MA]]
-
[[Category: Kizhakkedathu, J N]]
+
[[Category: Kizhakkedathu JN]]
-
[[Category: Kwan, D H]]
+
[[Category: Kwan DH]]
-
[[Category: Samain, E]]
+
[[Category: Samain E]]
-
[[Category: Withers, S G]]
+
[[Category: Withers SG]]
-
[[Category: Blood group antigen]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of a family 98 glycoside hydrolase catalytic module (Sp3GH98) in complex with the type 1 blood group A-tetrasaccharide (E558A, X01 mutant)

PDB ID 4d6f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4d6f"
Personal tools