6l00

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'''Unreleased structure'''
 
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The entry 6l00 is ON HOLD
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==Crystal structure of the cell-wall binding domain (CBD) of endolysin LysIME-EF1==
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<StructureSection load='6l00' size='340' side='right'caption='[[6l00]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6l00]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_phage_IMEEF1 Enterococcus phage IMEEF1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L00 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L00 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l00 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l00 OCA], [https://pdbe.org/6l00 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l00 RCSB], [https://www.ebi.ac.uk/pdbsum/6l00 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l00 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/S5MRN1_9CAUD S5MRN1_9CAUD]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Using bacteriophage-derived endolysins as an alternative strategy for fighting drug-resistant bacteria has recently been garnering renewed interest. However, their application is still hindered by their narrow spectra of activity. In our previous work, we demonstrated that the endolysin LysIME-EF1 possesses efficient bactericidal activity against multiple strains of Enterococcus faecalis (E. faecalis). Herein, we observed an 8 kDa fragment and hypothesized that it contributes to LysIME-EF1 lytic activity. To examine our hypothesis, we determined the structure of LysIME-EF1 at 1.75 A resolution. LysIME-EF1 exhibits a unique architecture in which one full-length LysIME-EF1 forms a tetramer with three additional C-terminal cell-wall binding domains (CBDs) that correspond to the abovementioned 8 kDa fragment. Furthermore, we identified an internal ribosomal binding site (RBS) and alternative start codon within LysIME-EF1 gene, which are demonstrated to be responsible for the translation of the truncated CBD. To elucidate the molecular mechanism for the lytic activity of LysIME-EF1, we combined mutagenesis, lytic activity assays and in vivo animal infection experiments. The results confirmed that the additional LysIME-EF1 CBDs are important for LysIME-EF1 architecture and its lytic activity. To our knowledge, this is the first determined structure of multimeric endolysin encoded by a single gene in E. faecalis phages. As such, it may provide valuable insights into designing potent endolysins against the opportunistic pathogen E. faecalis.
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Authors: Ouyang, S.Y., Zhen, X.K.
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Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.,Zhou B, Zhen X, Zhou H, Zhao F, Fan C, Perculija V, Tong Y, Mi Z, Ouyang S PLoS Pathog. 2020 Mar 16;16(3):e1008394. doi: 10.1371/journal.ppat.1008394., eCollection 2020 Mar. PMID:32176738<ref>PMID:32176738</ref>
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Description: Crystal structure of the cell binding domain of endolysin
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ouyang, S.Y]]
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<div class="pdbe-citations 6l00" style="background-color:#fffaf0;"></div>
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[[Category: Zhen, X.K]]
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==See Also==
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*[[Lysin 3D structures|Lysin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Enterococcus phage IMEEF1]]
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[[Category: Large Structures]]
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[[Category: Ouyang SY]]
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[[Category: Zhen XK]]

Current revision

Crystal structure of the cell-wall binding domain (CBD) of endolysin LysIME-EF1

PDB ID 6l00

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