This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dmi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:12, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='3dmi' size='340' side='right'caption='[[3dmi]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='3dmi' size='340' side='right'caption='[[3dmi]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Diatom Diatom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DMI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dmi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phaeodactylum_tricornutum Phaeodactylum tricornutum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pet J ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2850 Diatom])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmi OCA], [http://pdbe.org/3dmi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dmi RCSB], [http://www.ebi.ac.uk/pdbsum/3dmi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmi ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmi OCA], [https://pdbe.org/3dmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmi RCSB], [https://www.ebi.ac.uk/pdbsum/3dmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmi ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8GTB5_PHATR Q8GTB5_PHATR]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 27: Line 29:
</div>
</div>
<div class="pdbe-citations 3dmi" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3dmi" style="background-color:#fffaf0;"></div>
- 
-
==See Also==
 
-
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Diatom]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Akazaki, H]]
 
-
[[Category: Hakamata, W]]
 
-
[[Category: Hama, T]]
 
-
[[Category: Hirano, T]]
 
-
[[Category: Hosokawa, M]]
 
-
[[Category: Kawai, F]]
 
-
[[Category: Lim, B K]]
 
-
[[Category: Nishio, T]]
 
-
[[Category: Oku, T]]
 
-
[[Category: Park, S Y]]
 
-
[[Category: Sakurai, N]]
 
-
[[Category: Cytochrome c6]]
 
-
[[Category: Electron transport]]
 
[[Category: Phaeodactylum tricornutum]]
[[Category: Phaeodactylum tricornutum]]
-
[[Category: Transit peptide]]
+
[[Category: Akazaki H]]
 +
[[Category: Hakamata W]]
 +
[[Category: Hama T]]
 +
[[Category: Hirano T]]
 +
[[Category: Hosokawa M]]
 +
[[Category: Kawai F]]
 +
[[Category: Lim B-K]]
 +
[[Category: Nishio T]]
 +
[[Category: Oku T]]
 +
[[Category: Park S-Y]]
 +
[[Category: Sakurai N]]

Current revision

Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution

PDB ID 3dmi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools