6kyw

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'''Unreleased structure'''
 
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The entry 6kyw is ON HOLD until Paper Publication
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==S8-mSRK-S8-SP11 complex==
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<StructureSection load='6kyw' size='340' side='right'caption='[[6kyw]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6kyw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Brassica_rapa Brassica rapa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KYW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6KYW FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6011274&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6kyw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6kyw OCA], [https://pdbe.org/6kyw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6kyw RCSB], [https://www.ebi.ac.uk/pdbsum/6kyw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6kyw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q39276_BRACM Q39276_BRACM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Self-incompatibility (SI) is a breeding system that promotes cross-fertilization. In Brassica, pollen rejection is induced by a haplotype-specific interaction between pistil determinant SRK (S receptor kinase) and pollen determinant SP11 (S-locus Protein 11, also named SCR) from the S-locus. Although the structure of the B. rapa S9-SRK ectodomain (eSRK) and S9-SP11 complex has been determined, it remains unclear how SRK discriminates self- and nonself-SP11. Here, we uncover the detailed mechanism of self/nonself-discrimination in Brassica SI by determining the S8-eSRK-S8-SP11 crystal structure and performing molecular dynamics (MD) simulations. Comprehensive binding analysis of eSRK and SP11 structures reveals that the binding free energies are most stable for cognate eSRK-SP11 combinations. Residue-based contribution analysis suggests that the modes of eSRK-SP11 interactions differ between intra- and inter-subgroup (a group of phylogenetically neighboring haplotypes) combinations. Our data establish a model of self/nonself-discrimination in Brassica SI.
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Authors:
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Mechanism of self/nonself-discrimination in Brassica self-incompatibility.,Murase K, Moriwaki Y, Mori T, Liu X, Masaka C, Takada Y, Maesaki R, Mishima M, Fujii S, Hirano Y, Kawabe Z, Nagata K, Terada T, Suzuki G, Watanabe M, Shimizu K, Hakoshima T, Takayama S Nat Commun. 2020 Oct 1;11(1):4916. doi: 10.1038/s41467-020-18698-w. PMID:33004803<ref>PMID:33004803</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6kyw" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Brassica rapa]]
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[[Category: Large Structures]]
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[[Category: Hakoshima T]]
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[[Category: Mori T]]
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[[Category: Murase K]]

Current revision

S8-mSRK-S8-SP11 complex

PDB ID 6kyw

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