6u9i
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of BvnE pinacolase from Penicillium brevicompactum== | |
+ | <StructureSection load='6u9i' size='340' side='right'caption='[[6u9i]], [[Resolution|resolution]] 1.78Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6u9i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Penicillium_brevicompactum Penicillium brevicompactum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6U9I FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.777Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6u9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u9i OCA], [https://pdbe.org/6u9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6u9i RCSB], [https://www.ebi.ac.uk/pdbsum/6u9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6u9i ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A5Q0MV05_PENBR A0A5Q0MV05_PENBR] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Fungal bicyclo[2.2.2]diazaoctane indole alkaloids represent an important family of natural products with a wide-spectrum of biological activities. Although biomimetic total syntheses of representative compounds have been reported, the details of their biogenesis, especially the mechanisms for assembly of diastereomerically distinct and enantiomerically antipodal metabolites, have remained largely uncharacterized. Brevianamide A represents a basic form of the sub-family bearing a dioxopiperazine core and a rare 3-spiro-psi-indoxyl skeleton. Here, we identified the Brevianamide A biosynthetic gene cluster from Penicillium brevicompactum NRRL 864 and elucidated the metabolic pathway. BvnE was revealed to be an essential isomerase/semi-pinacolase that specifies selective production of the natural product. Structural elucidation, molecular modeling, and mutational analysis of BvnE, and quantum chemical calculations provided mechanistic insights into the diastereoselective formation of the 3-spiro-psi-indoxyl moiety in Brevianamide A. This occurs through a BvnE-controlled semi-pinacol rearrangement and a subsequent spontaneous intramolecular [4+2] hetero-Diels-Alder cycloaddition. | ||
- | + | Fungal-derived brevianamide assembly by a stereoselective semipinacolase.,Ye Y, Du L, Zhang X, Newmister SA, McCauley M, Alegre-Requena JV, Zhang W, Mu S, Minami A, Fraley AE, Adrover-Castellano ML, Carney NA, Shende VV, Qi F, Oikawa H, Kato H, Tsukamoto S, Paton RS, Williams RM, Sherman DH, Li S Nat Catal. 2020 Jun;3(6):497-506. doi: 10.1038/s41929-020-0454-9. Epub 2020 May, 18. PMID:32923978<ref>PMID:32923978</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 6u9i" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Penicillium brevicompactum]] |
- | [[Category: | + | [[Category: Adrover-Castellano ML]] |
- | [[Category: | + | [[Category: Alegre-Requena JV]] |
- | [[Category: | + | [[Category: Carney N]] |
- | [[Category: | + | [[Category: Du L]] |
- | [[Category: | + | [[Category: Fraley AE]] |
- | [[Category: | + | [[Category: Kato H]] |
- | [[Category: | + | [[Category: Li S]] |
- | [[Category: | + | [[Category: McCauley M]] |
- | [[Category: | + | [[Category: Minami A]] |
- | [[Category: | + | [[Category: Mu S]] |
- | [[Category: | + | [[Category: Newmister SA]] |
- | [[Category: | + | [[Category: Oikawa H]] |
- | [[Category: | + | [[Category: Paton RS]] |
+ | [[Category: Shende VV]] | ||
+ | [[Category: Sherman DH]] | ||
+ | [[Category: Tsukamoto S]] | ||
+ | [[Category: Williams RM]] | ||
+ | [[Category: Ye Y]] | ||
+ | [[Category: Zhang W]] | ||
+ | [[Category: Zhang X]] |
Current revision
Crystal structure of BvnE pinacolase from Penicillium brevicompactum
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Categories: Large Structures | Penicillium brevicompactum | Adrover-Castellano ML | Alegre-Requena JV | Carney N | Du L | Fraley AE | Kato H | Li S | McCauley M | Minami A | Mu S | Newmister SA | Oikawa H | Paton RS | Shende VV | Sherman DH | Tsukamoto S | Williams RM | Ye Y | Zhang W | Zhang X