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6qsx

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Current revision (12:07, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6qsx' size='340' side='right'caption='[[6qsx]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
<StructureSection load='6qsx' size='340' side='right'caption='[[6qsx]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6qsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QSX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6qsx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QSX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=JGN:[(2~{S},4~{S})-1-[(5,7-dimethyl-1~{H}-indol-4-yl)methyl]-4-methoxy-piperidin-2-yl]methanol'>JGN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CFB, BF, BFD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JGN:[(2~{S},4~{S})-1-[(5,7-dimethyl-1~{H}-indol-4-yl)methyl]-4-methoxy-piperidin-2-yl]methanol'>JGN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alternative-complement-pathway_C3/C5_convertase Alternative-complement-pathway C3/C5 convertase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.47 3.4.21.47] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qsx OCA], [https://pdbe.org/6qsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qsx RCSB], [https://www.ebi.ac.uk/pdbsum/6qsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qsx ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qsx OCA], [http://pdbe.org/6qsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qsx RCSB], [http://www.ebi.ac.uk/pdbsum/6qsx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qsx ProSAT]</span></td></tr>
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</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN]] Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:[http://omim.org/entry/612924 612924]]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.<ref>PMID:17182750</ref> <ref>PMID:20513133</ref>
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[https://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN] Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:[https://omim.org/entry/612924 612924]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.<ref>PMID:17182750</ref> <ref>PMID:20513133</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN]] Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.
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[https://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN] Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Alternative-complement-pathway C3/C5 convertase]]
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[[Category: Homo sapiens]]
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[[Category: Human]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Adams, C M]]
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[[Category: Adams CM]]
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[[Category: Anderson, K]]
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[[Category: Anderson K]]
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[[Category: Argikar, U]]
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[[Category: Argikar U]]
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[[Category: Crowley, M]]
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[[Category: Crowley M]]
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[[Category: Cumin, F]]
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[[Category: Cumin F]]
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[[Category: Eder, J]]
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[[Category: Eder J]]
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[[Category: Ehara, T]]
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[[Category: Ehara T]]
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[[Category: Erbel, P]]
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[[Category: Erbel P]]
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[[Category: Flohr, S]]
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[[Category: Flohr S]]
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[[Category: Gerhartz, B]]
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[[Category: Gerhartz B]]
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[[Category: Harrison, R]]
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[[Category: Harrison R]]
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[[Category: Hughes, N]]
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[[Category: Hughes N]]
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[[Category: Jaffee, B]]
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[[Category: Jaffee B]]
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[[Category: Karki, R]]
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[[Category: Karki R]]
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[[Category: Maibaum, J]]
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[[Category: Mac Sweeney A]]
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[[Category: Mainolfi, N]]
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[[Category: Maibaum J]]
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[[Category: Mogi, M]]
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[[Category: Mainolfi N]]
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[[Category: Sedrani, R]]
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[[Category: Mogi M]]
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[[Category: Sellner, H]]
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[[Category: Sedrani R]]
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[[Category: Sirockin, F]]
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[[Category: Sellner H]]
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[[Category: Smith, T M]]
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[[Category: Sirockin F]]
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[[Category: Sweeney, A Mac]]
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[[Category: Smith TM]]
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[[Category: Valeur, E]]
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[[Category: Valeur E]]
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[[Category: Wiesmann, C]]
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[[Category: Wiesmann C]]
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[[Category: C3 convertase]]
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[[Category: Complement]]
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[[Category: Hydrolase]]
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[[Category: Immune]]
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[[Category: Inhibitor]]
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Current revision

Complement factor B protease domain in complex with the reversible inhibitor ((2S,4S)-1-((5,7-dimethyl-1H-indol-4-yl)methyl)-4-methoxypiperidin-2-yl)methanol.

PDB ID 6qsx

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