6g4x

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==The solution NMR structure of [C18S,C24S]brevinin-1BYa in sodium dodecyl sulphate micelles==
==The solution NMR structure of [C18S,C24S]brevinin-1BYa in sodium dodecyl sulphate micelles==
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<StructureSection load='6g4x' size='340' side='right'caption='[[6g4x]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='6g4x' size='340' side='right'caption='[[6g4x]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6g4x]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G4X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6G4X FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6g4x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rana_boylii Rana boylii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6G4X FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6g4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g4x OCA], [http://pdbe.org/6g4x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6g4x RCSB], [http://www.ebi.ac.uk/pdbsum/6g4x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6g4x ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6g4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g4x OCA], [https://pdbe.org/6g4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6g4x RCSB], [https://www.ebi.ac.uk/pdbsum/6g4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6g4x ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BR1A_RANBO BR1A_RANBO]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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The emergence of strains of the human pathogen Candida albicans with resistance to commonly used antibiotics has necessitated a search for new types of antifungal agents. Six peptides with antimicrobial activity were isolated from norepinephrine-stimulated skin secretions from the foothill yellow-legged frog Rana boylii. Brevinin-1BYa (FLPILASLAA10KFGPKLF CLV20TKKC) was particularly potent against C. albicans [minimal inhibitory concentration (MIC) = 3 microm] and also active against Escherichia coli (MIC = 17 microm) and Staphylococcus aureus (MIC = 2 microm), but its therapeutic potential for systemic use is limited by its strong hemolytic activity (HC50 = 4 microm). The single amino acid substitution (Phe12 --&gt; Leu) in brevinin-1BYb resulted in a fourfold lower potency against C. albicans and the additional amino acid substitutions (Lys11 --&gt; Thr, Phe17 --&gt; Leu and Val20 --&gt; Ile) in brevinin-1BYc resulted in a ninefold decrease in activity. Two members of the ranatuerin-2 family and one member of the temporin family were also isolated from the secretions but showed relatively low potency against the three microorganisms tested.
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Brevinin-1BYa is a 24-amino acid residue host-defense peptide, first isolated from skin secretions of the foothill yellow-legged frog Rana boylii. The peptide is of interest, as it shows broad-spectrum antimicrobial activity, and is particularly effective against opportunistic yeast pathogens. Its potential for clinical use, however, is hindered by its latent haemolytic activity. The structures of two analogues, the less haemolytic [C18S,C24S]brevinin-1BYa and the more potent cis-dicarba-brevinin-1BYa, were investigated in various solution and membrane-mimicking environments by [Formula: see text] spectroscopy and molecular modelling techniques. Neither peptide possesses a secondary structure in aqueous solution. In both the membrane-mimicking sodium dodecyl sulphate micelles and 33% 2,2,2-trifluoroethanol ([Formula: see text] solvent mixture, the peptides' structures are characterised by two [Formula: see text]-helices connected by a flexible hinge located at the [Formula: see text] residues. With the aid of molecular dynamics simulations and paramagnetic probes, it was determined that the peptides' helical segments lie parallel to the micellar surface, with their hydrophobic residues facing towards the micelle core and the hydrophilic residues pointing outwards, suggesting that both peptides exert their biological activity by a non-pore-forming mechanism. Unlike that of the dicarba analogue, the C-terminus of the acyclic peptide is only weakly associated with the micellar surface and is in direct contact with the surrounding aqueous solvent.
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Isolation of peptides of the brevinin-1 family with potent candidacidal activity from the skin secretions of the frog Rana boylii.,Conlon JM, Sonnevend A, Patel M, Davidson C, Nielsen PF, Pal T, Rollins-Smith LA J Pept Res. 2003 Nov;62(5):207-13. PMID:14531844<ref>PMID:14531844</ref>
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Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides.,Timmons PB, O'Flynn D, Conlon JM, Hewage CM Eur Biophys J. 2019 Dec;48(8):701-710. doi: 10.1007/s00249-019-01395-y. Epub 2019, Sep 12. PMID:31515575<ref>PMID:31515575</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Conlon, J M]]
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[[Category: Rana boylii]]
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[[Category: Flynn, D P.O]]
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[[Category: Conlon JM]]
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[[Category: Hewage, C M]]
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[[Category: Hewage CM]]
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[[Category: Timmons, P B]]
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[[Category: O'Flynn DP]]
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[[Category: Antimicrobial peptide]]
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[[Category: Timmons PB]]
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[[Category: Antimicrobial protein]]
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[[Category: Cationic]]
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Current revision

The solution NMR structure of [C18S,C24S]brevinin-1BYa in sodium dodecyl sulphate micelles

PDB ID 6g4x

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