6t3u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "6t3u" [edit=sysop:move=sysop])
Current revision (08:21, 17 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6t3u is ON HOLD
+
==PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation==
 +
<StructureSection load='6t3u' size='340' side='right'caption='[[6t3u]], [[Resolution|resolution]] 2.21&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6t3u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6T3U FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.21&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6t3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t3u OCA], [https://pdbe.org/6t3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6t3u RCSB], [https://www.ebi.ac.uk/pdbsum/6t3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6t3u ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Phytochrome proteins control the growth, reproduction, and photosynthesis of plants, fungi, and bacteria. Light is detected by a bilin cofactor, but it remains elusive how this leads to activation of the protein through structural changes. We present serial femtosecond X-ray crystallographic data of the chromophore-binding domains of a bacterial phytochrome at delay times of 1 ps and 10 ps after photoexcitation. The data reveal a twist of the D-ring, which leads to partial detachment of the chromophore from the protein. Unexpectedly, the conserved so-called pyrrole water is photodissociated from the chromophore, concomitant with movement of the A-ring and a key signalling aspartate. The changes are wired together by ultrafast backbone and water movements around the chromophore, channeling them into signal transduction towards the output domains. We suggest that the observed collective changes are important for the phytochrome photoresponse, explaining the earliest steps of how plants, fungi and bacteria sense red light.
-
Authors: Claesson, E., Takala, H., Yuan Wahlgren, W., Pandey, S., Schmidt, M., Westenhoff, S.
+
The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser.,Claesson E, Wahlgren WY, Takala H, Pandey S, Castillon L, Kuznetsova V, Henry L, Panman M, Carrillo M, Kubel J, Nanekar R, Isaksson L, Nimmrich A, Cellini A, Morozov D, Maj M, Kurttila M, Bosman R, Nango E, Tanaka R, Tanaka T, Fangjia L, Iwata S, Owada S, Moffat K, Groenhof G, A Stojkovic E, A Ihalainen J, Schmidt M, Westenhoff S Elife. 2020 Mar 31;9. pii: 53514. doi: 10.7554/eLife.53514. PMID:32228856<ref>PMID:32228856</ref>
-
Description: PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Takala, H]]
+
<div class="pdbe-citations 6t3u" style="background-color:#fffaf0;"></div>
-
[[Category: Westenhoff, S]]
+
== References ==
-
[[Category: Claesson, E]]
+
<references/>
-
[[Category: Schmidt, M]]
+
__TOC__
-
[[Category: Yuan Wahlgren, W]]
+
</StructureSection>
-
[[Category: Pandey, S]]
+
[[Category: Deinococcus radiodurans]]
 +
[[Category: Large Structures]]
 +
[[Category: Claesson E]]
 +
[[Category: Pandey S]]
 +
[[Category: Schmidt M]]
 +
[[Category: Takala H]]
 +
[[Category: Westenhoff S]]
 +
[[Category: Yuan Wahlgren W]]

Current revision

PAS-GAF fragment from Deinococcus radiodurans phytochrome 1ps after photoexcitation

PDB ID 6t3u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools