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Malate Dehydrogenase 3D structures

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(New page: == 3D Structures of Malate Dehydrogenase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| <br /> The '''holo-MDH''...)
Current revision (10:11, 25 June 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 9: Line 9:
**[[2dfd]], [[4wlv]] – hMDH2 +NAD – human<br />
**[[2dfd]], [[4wlv]] – hMDH2 +NAD – human<br />
 +
**[[7bsj]], [[7bsk]], [[7bsl]] – hMd2 (mutant) +NAD<br />
**[[4mdh]] – pMDH+NAD - pig<br />
**[[4mdh]] – pMDH+NAD - pig<br />
-
**[[2x0r]] – HmMDH (mutant)+NAD - ''Haloarcula marismortui''<br />
+
**[[1o6z]], [[2x0r]] – HmMDH (mutant)+NAD - ''Haloarcula marismortui''<br />
-
**[[1o6z]] - HmMDH (mutant)+NADH<br />
+
**[[1hlp]] – HmMDH+NAD<br />
**[[1hlp]] – HmMDH+NAD<br />
**[[1x0i]] – AfMDH+NADH – ''Archaeoglobus fulgidus''<br />
**[[1x0i]] – AfMDH+NADH – ''Archaeoglobus fulgidus''<br />
Line 38: Line 38:
**[[5kvv]] – MtMd + NADH – ''Mycobacterium tuberculosis'' <br />
**[[5kvv]] – MtMd + NADH – ''Mycobacterium tuberculosis'' <br />
**[[6ihd]] – MsMd + NAD – ''Metallosphaera sedula''<br />
**[[6ihd]] – MsMd + NAD – ''Metallosphaera sedula''<br />
 +
**[[6itl]] – Md + NAD – ''Mannheimia succiniciproducens''<br />
 +
**[[6y91]] – PfMd + NAD – ''Plasmodium falciparum''<br />
 +
**[[6zn7]] – BbMd + NADP – ''Bdellovibrio bacteriovorus''<br />
 +
**[[7f8d]], [[7x1l]] – GsMd (mutant) + NADH – ''Geobacillus stearophilus''<br />
* Md binary complex
* Md binary complex
 +
**[[7rm9]] – hMd1 + malonate <br />
**[[4wle]] – hMd2 + citrate <br />
**[[4wle]] – hMd2 + citrate <br />
**[[4wlf]] – hMd2 + malate <br />
**[[4wlf]] – hMd2 + malate <br />
**[[5kka]] – EcMd + inhibitor <br />
**[[5kka]] – EcMd + inhibitor <br />
-
**[[5z3w]] – EcMd + Ag<br />
+
**[[5z3w]], [[6ka0]] – EcMd + Ag<br />
**[[2cmd]] - EcMd + citrate<br />
**[[2cmd]] - EcMd + citrate<br />
**[[3gvi]] - BmMDH+ADP<br />
**[[3gvi]] - BmMDH+ADP<br />
Line 51: Line 56:
**[[6bal]] – HiMd + malate - ''Haemophilus influenzae''<br />
**[[6bal]] – HiMd + malate - ''Haemophilus influenzae''<br />
**[[6qss]] – Md + Tb derivative – ''Ignicoccus islandicus''<br />
**[[6qss]] – Md + Tb derivative – ''Ignicoccus islandicus''<br />
 +
**[[6zng]], [[6znt]] – BbMd + acetyl-CoA<br />
 +
**[[6znu]] – BbMd (mutant) + acetyl-CoA<br />
* Md ternary complex
* Md ternary complex
Line 57: Line 64:
**[[4wlu]] – hMd2 + NADH + malate <br />
**[[4wlu]] – hMd2 + NADH + malate <br />
**[[5mdh]] – pMd+NAD+alpha-ketomalonic acid <br />
**[[5mdh]] – pMd+NAD+alpha-ketomalonic acid <br />
 +
**[[5zi2]] – yMd + NAD + ADP - yeast<br />
 +
**[[5zi4]] – yMd + NAD + oxalacetate <br />
**[[4plh]], [[4plt]] – ApMd + NAD + oxamate – ''Apicomplexa''<br />
**[[4plh]], [[4plt]] – ApMd + NAD + oxamate – ''Apicomplexa''<br />
**[[4plv]], [[4plw]] – ApMd + NAD + lactate <br />
**[[4plv]], [[4plw]] – ApMd + NAD + lactate <br />
Line 63: Line 72:
**[[1emd]] – EcMd+NAD+citrate<br />
**[[1emd]] – EcMd+NAD+citrate<br />
**[[6ihe]] – MsMd + NAD + malate <br />
**[[6ihe]] – MsMd + NAD + malate <br />
-
**[[5zi2]] – yMd + NAD + ADP - yeast<br />
+
**[[6itk]] – Md + NAD + malate – ''Corynebacterium glutamicum''<br />
-
**[[5zi4]] – yMd + NAD + oxalacetate <br />
+
**[[6r8g]] – PfMd + NAD + thiazol derivative<br />
 +
**[[7by9]] – GsMd + NADH + oxalacetate – ''Geobacillus stearophilus''<br />
 +
**[[7bya]] – GsMd + adenosine diphosphoribose + oxalacetate <br />
* apo-MDH
* apo-MDH
 +
**[[7rrl]] – hMd1<br />
**[[4wln]] – hMd2 <br />
**[[4wln]] – hMd2 <br />
**[[1mld]] – pMDH<br />
**[[1mld]] – pMDH<br />
 +
**[[7mdh]] – MDH – Sorghum<br />
**[[5zi3]] – yMd <br />
**[[5zi3]] – yMd <br />
**[[2j5r]], [[2j5k]], [[2j5q]], [[1d3a]], [[4jco]] – HmMDH <br />
**[[2j5r]], [[2j5k]], [[2j5q]], [[1d3a]], [[4jco]] – HmMDH <br />
-
**[[2hlp]] – HmMDH (mutant)<br />
+
**[[2hlp]], [[7q3x]] – HmMDH (mutant)<br />
-
**[[3hhp]], [[2pwz]] – EcMDH <br />
+
**[[3hhp]], [[2pwz]], [[6ka1]], [[7cgc]], [[7cgd]] – EcMDH <br />
 +
**[[7xqn]] – EcMd (mutant) br />
**[[3fi9]] – MDH – ''Porphyromonas gingivalis'' <br />
**[[3fi9]] – MDH – ''Porphyromonas gingivalis'' <br />
**[[3d5t]] - MDH – ''Burkholderia pseudomallei''<br />
**[[3d5t]] - MDH – ''Burkholderia pseudomallei''<br />
Line 81: Line 95:
**[[1gv1]] – CvMDH <br />
**[[1gv1]] – CvMDH <br />
**[[1b8p]] – AaMDH <br />
**[[1b8p]] – AaMDH <br />
-
**[[7mdh]] – MDH – Sorgum bicolor<br />
 
**[[3nep]] – Md – ''Salinibacter ruber''<br />
**[[3nep]] – Md – ''Salinibacter ruber''<br />
**[[3p7m]] – Md – ''Francisella tularensis''<br />
**[[3p7m]] – Md – ''Francisella tularensis''<br />
Line 90: Line 103:
**[[4bgu]] – Md – ''Haloferax volcanii''<br />
**[[4bgu]] – Md – ''Haloferax volcanii''<br />
**[[4bgv]] – Md – ''Picrophilus torridus''<br />
**[[4bgv]] – Md – ''Picrophilus torridus''<br />
-
**[[4ror]] – MeMd <br />
+
**[[5ulv]] – MeMd <br />
**[[4tvo]] – Md – ''Mycobacterium tuberculosis'' <br />
**[[4tvo]] – Md – ''Mycobacterium tuberculosis'' <br />
**[[6aoo]] – HiMd <br />
**[[6aoo]] – HiMd <br />
-
**[[5ulv]] – MeMd <br />
+
**[[5nfr]] – PfMd <br />
-
**[[5nfr]] – Md – ''Plasmodium falciparum''<br />
+
**[[4uuo]] – Md – ''Trichomonas vaginalis''<br />
**[[4uuo]] – Md – ''Trichomonas vaginalis''<br />
-
 
+
**[[6um4]] – Md – ''Naegleria fowleri''<br />
 +
**[[6pbl]] – Md – ''Legionella pneumophila''<br />
 +
**[[7by8]] – GsMd <br />
 +
**[[6zn4]], [[6zn9]], [[6znj]] – BbMd <br />
 +
**[[6zne]], [[6znk]], [[6znr]] – BbMd (mutant)<br />
 +
**[[7aob]] – Md – ''Thermaerobacter marianensis''<br />
 +
**[[7nrz]] – Md – ''Trypanosoma cruzi''<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of Malate Dehydrogenase

Updated on 25-June-2023
The holo-MDH contains NAD or its derivatives while the apo-MDH lacks it.

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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