6t6k

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(New page: '''Unreleased structure''' The entry 6t6k is ON HOLD until Paper Publication Authors: Sluchanko, N.N., Gushchin, I., Botnarevskiy, V.S., Slonimskiy, Y.B., Remeeva, A., Kovalev, K., Step...)
Current revision (12:55, 24 January 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6t6k is ON HOLD until Paper Publication
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==Y201W mutant of the orange carotenoid protein from Synechocystis at pH 6.5==
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<StructureSection load='6t6k' size='340' side='right'caption='[[6t6k]], [[Resolution|resolution]] 1.37&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6t6k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803_substr._Kazusa Synechocystis sp. PCC 6803 substr. Kazusa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T6K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6T6K FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.37&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ECH:BETA,BETA-CAROTEN-4-ONE'>ECH</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLY:GLYCINE'>GLY</scene>, <scene name='pdbligand=HIS:HISTIDINE'>HIS</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6t6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t6k OCA], [https://pdbe.org/6t6k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6t6k RCSB], [https://www.ebi.ac.uk/pdbsum/6t6k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6t6k ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/OCP_SYNY3 OCP_SYNY3] Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation of absorbed energy.<ref>PMID:16531492</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Here, we propose a possible photoactivation mechanism of a 35-kDa blue light-triggered photoreceptor, the Orange Carotenoid Protein (OCP), suggesting that the reaction involves the transient formation of a protonated ketocarotenoid (oxocarbenium cation) state. Taking advantage of engineering an OCP variant carrying the Y201W mutation, which shows superior spectroscopic and structural properties, it is shown that the presence of Trp201 augments the impact of one critical H-bond between the ketocarotenoid and the protein. This confers an unprecedented homogeneity of the dark-adapted OCP state and substantially increases the yield of the excited photoproduct S*, which is important for the productive photocycle to proceed. A 1.37 A crystal structure of OCP Y201W combined with femtosecond time-resolved absorption spectroscopy, kinetic analysis, and deconvolution of the spectral intermediates, as well as extensive quantum chemical calculations incorporating the effect of the local electric field, highlighted the role of charge-transfer states during OCP photoconversion.
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Authors: Sluchanko, N.N., Gushchin, I., Botnarevskiy, V.S., Slonimskiy, Y.B., Remeeva, A., Kovalev, K., Stepanov, A.V., Gordeliy, V., Maksimov, E.G.
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Role of hydrogen bond alternation and charge transfer states in photoactivation of the Orange Carotenoid Protein.,Yaroshevich IA, Maksimov EG, Sluchanko NN, Zlenko DV, Stepanov AV, Slutskaya EA, Slonimskiy YB, Botnarevskii VS, Remeeva A, Gushchin I, Kovalev K, Gordeliy VI, Shelaev IV, Gostev FE, Khakhulin D, Poddubnyy VV, Gostev TS, Cherepanov DA, Polivka T, Kloz M, Friedrich T, Paschenko VZ, Nadtochenko VA, Rubin AB, Kirpichnikov MP Commun Biol. 2021 May 10;4(1):539. doi: 10.1038/s42003-021-02022-3. PMID:33972665<ref>PMID:33972665</ref>
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Description: Y201W mutant of the orange carotenoid protein from Synechocystis at pH 6.5
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Slonimskiy, Y.B]]
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<div class="pdbe-citations 6t6k" style="background-color:#fffaf0;"></div>
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[[Category: Stepanov, A.V]]
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== References ==
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[[Category: Sluchanko, N.N]]
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<references/>
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[[Category: Maksimov, E.G]]
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__TOC__
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[[Category: Gushchin, I]]
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</StructureSection>
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[[Category: Gordeliy, V]]
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[[Category: Large Structures]]
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[[Category: Kovalev, K]]
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[[Category: Synechocystis sp. PCC 6803 substr. Kazusa]]
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[[Category: Botnarevskiy, V.S]]
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[[Category: Botnarevskiy VS]]
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[[Category: Remeeva, A]]
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[[Category: Gordeliy V]]
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[[Category: Gushchin I]]
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[[Category: Kovalev K]]
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[[Category: Maksimov EG]]
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[[Category: Remeeva A]]
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[[Category: Slonimskiy YB]]
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[[Category: Sluchanko NN]]
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[[Category: Stepanov AV]]

Current revision

Y201W mutant of the orange carotenoid protein from Synechocystis at pH 6.5

PDB ID 6t6k

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