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| | <StructureSection load='1iz5' size='340' side='right'caption='[[1iz5]], [[Resolution|resolution]] 1.80Å' scene=''> | | <StructureSection load='1iz5' size='340' side='right'caption='[[1iz5]], [[Resolution|resolution]] 1.80Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1iz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1iz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IZ5 FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ge8|1ge8]], [[1iz4|1iz4]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz5 OCA], [http://pdbe.org/1iz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz5 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz5 OCA], [https://pdbe.org/1iz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iz5 RCSB], [https://www.ebi.ac.uk/pdbsum/1iz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz5 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/PCNA_PYRFU PCNA_PYRFU]] Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication. | + | [https://www.uniprot.org/uniprot/PCNA_PYRFU PCNA_PYRFU] Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | ==See Also== | | ==See Also== |
| - | *[[Proliferating Cell Nuclear Antigen|Proliferating Cell Nuclear Antigen]] | + | *[[Proliferating cell nuclear antigen 3D structures|Proliferating cell nuclear antigen 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 43587]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Ishino, S]] | + | [[Category: Pyrococcus furiosus]] |
| - | [[Category: Ishino, Y]] | + | [[Category: Ishino S]] |
| - | [[Category: Matsumiya, S]]
| + | [[Category: Ishino Y]] |
| - | [[Category: Morikawa, K]] | + | [[Category: Matsumiya S]] |
| - | [[Category: Dna]] | + | [[Category: Morikawa K]] |
| - | [[Category: Dna binding protein]] | + | |
| - | [[Category: Processivity]]
| + | |
| - | [[Category: Replication]]
| + | |
| - | [[Category: Sliding clamp]]
| + | |
| Structural highlights
Function
PCNA_PYRFU Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Two mutant proliferating cell nuclear antigens from the hyperthermophilic archaeon Pyrococcus furiosus, PfuPCNA(D143A) and PfuPCNA(D143A/D147A), were prepared by site-specific mutagenesis. The results from gel filtration showed that mutations at D143 and D147 drastically affect the stability of the trimeric structure of PfuPCNA. The PfuPCNA(D143A) still retained the activity to stimulate the DNA polymerase reaction, but PfuPCNA(D143A/D147A) lost the activity. Crystal structures of the mutant PfuPCNAs were determined. Although the wild-type PCNA forms a toroidal trimer with intermolecular hydrogen bonds between the N- and C-terminal domains, the mutant PfuPCNAs exist as V-shaped dimers through intermolecular hydrogen bonds between the two C-terminal domains in the crystal. Because the mutated residues are involved in the intermolecular ion pairs through their side chains in the wild-type PfuPCNA, these ion pairs seem to play a key role in maintaining the toroidal structure of the PfuPCNA trimer. The comparison of the crystal structures revealed intriguing conformational flexibility of each domain in the PfuPCNA subunit. This structural versatility of PCNA may be involved in the mechanisms for ring opening and closing.
Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA.,Matsumiya S, Ishino S, Ishino Y, Morikawa K Protein Sci. 2003 Apr;12(4):823-31. PMID:12649440[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Matsumiya S, Ishino S, Ishino Y, Morikawa K. Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA. Protein Sci. 2003 Apr;12(4):823-31. PMID:12649440
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