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Nitrite reductase 3D structures

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(New page: ==3D structures of nitrite reductase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *'''Cu-containing nitrite re...)
Current revision (07:37, 18 July 2023) (edit) (undo)
 
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Line 7: Line 7:
**[[1nia]], [[1nib]], [[1nic]], [[1nid]], [[1nie]], [[1nif]], [[2nrd]], [[1kcb]], [[1rzp]], [[1rzq]], [[2bw4]], [[2bw5]], [[2avf]], [[5l6k]], [[5i6l]], [[5l6m]], [[5i6n]], [[5l6o]], [[5i6p]], [[5n8f]], [[5n8g]], [[5n8h]], [[5n8i]], [[6gsq]], [[6gt2]], [[6gtj]] – AcNIR + Cu – ''Achromobacter cycloclastes''<br />
**[[1nia]], [[1nib]], [[1nic]], [[1nid]], [[1nie]], [[1nif]], [[2nrd]], [[1kcb]], [[1rzp]], [[1rzq]], [[2bw4]], [[2bw5]], [[2avf]], [[5l6k]], [[5i6l]], [[5l6m]], [[5i6n]], [[5l6o]], [[5i6p]], [[5n8f]], [[5n8g]], [[5n8h]], [[5n8i]], [[6gsq]], [[6gt2]], [[6gtj]] – AcNIR + Cu – ''Achromobacter cycloclastes''<br />
 +
**[[6knf]], [[6kng]] – AcNIR + Cu – Cryo EM<br />
**[[2afn]], [[1aq8]], [[1as7]], [[2fjs]], [[2pp7]], [[2pp8]], [[3h4h]], [[3h56]], [[4ysc]], [[4yse]], [[5d4h]], [[5d4i]], [[5d4j]], [[5f7a]], [[5f7b]] - AfNIR + Cu – ''Alcaligenes faecalis''<br />
**[[2afn]], [[1aq8]], [[1as7]], [[2fjs]], [[2pp7]], [[2pp8]], [[3h4h]], [[3h56]], [[4ysc]], [[4yse]], [[5d4h]], [[5d4i]], [[5d4j]], [[5f7a]], [[5f7b]] - AfNIR + Cu – ''Alcaligenes faecalis''<br />
**[[1ntd]], [[1npj]], [[1npn]], [[1zdq]], [[3h4f]] - AfNIR (mutant) + Cu<br />
**[[1ntd]], [[1npj]], [[1npn]], [[1zdq]], [[3h4f]] - AfNIR (mutant) + Cu<br />
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**[[1oe2]], [[2jfc]] - AxNIR (mutant) + Cu<br />
**[[1oe2]], [[2jfc]] - AxNIR (mutant) + Cu<br />
**[[1mzz]], [[2dy2]] - RsNIR + Cu – ''Rhodobacter sphaeroides''<br />
**[[1mzz]], [[2dy2]] - RsNIR + Cu – ''Rhodobacter sphaeroides''<br />
-
**[[2dv6]] - NIR + Cu – ''Hyphomicrobium denitrificans''<br />
+
**[[2dv6]], [[6tfo]] - HdNIR + Cu – ''Hyphomicrobium denitrificans''<br />
**[[3wia]] - GkNIR + Cu – ''Geobacillus kaustophilus''<br />
**[[3wia]] - GkNIR + Cu – ''Geobacillus kaustophilus''<br />
**[[3wkq]], [[3x1e]], [[4ysa]], [[4ysd]], [[4yso]], [[4ysp]], [[4ysq]], [[4ysr]], [[4yss]], [[4yst]], [[4ysu]], [[4zk8]], [[5ytl]] - GtNIR + Cu - ''Geobacillus thermodentntrificans''<br />
**[[3wkq]], [[3x1e]], [[4ysa]], [[4ysd]], [[4yso]], [[4ysp]], [[4ysq]], [[4ysr]], [[4yss]], [[4yst]], [[4ysu]], [[4zk8]], [[5ytl]] - GtNIR + Cu - ''Geobacillus thermodentntrificans''<br />
-
**[[3x1f]], [[3x1g]] - GtNIR (mutant) + Cu <br />
+
**[[3x1f]], [[3x1g]], [[5ytm]] - GtNIR (mutant) + Cu <br />
**[[5tb7]], [[5ue6]] - NIR + Cu – ''Neisseria gonorrhoeae''<br />
**[[5tb7]], [[5ue6]] - NIR + Cu – ''Neisseria gonorrhoeae''<br />
**[[6hbe]] - NIR + Cu – ''Thermus scotoductus''<br />
**[[6hbe]] - NIR + Cu – ''Thermus scotoductus''<br />
**[[6qpu]] – RpNIR + Cu – ''Ralstonia pickettii''<br />
**[[6qpu]] – RpNIR + Cu – ''Ralstonia pickettii''<br />
 +
**[[6thf]], [[6zar]], [[6zas]] – BrNIR + Cu – ''Bradyrhizobium''<br />
 +
**[[7p2f]] – NIR + Cu – ''Sinorhizobium meliloti''<br />
 +
**[[4knt]] – NIR + Cu – ''Nitrosomonas europaea''<br />
*Cu-containing nitrite reductase with variety of metals
*Cu-containing nitrite reductase with variety of metals
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**[[3wi9]] - GkNIR + Zn + Cu <br />
**[[3wi9]] - GkNIR + Zn + Cu <br />
**[[5onx]], [[5ony]] - NIR + Zn + Cu – ''Alcaligenes xylosoxydans''<br />
**[[5onx]], [[5ony]] - NIR + Zn + Cu – ''Alcaligenes xylosoxydans''<br />
 +
**[[6the]] – BrNIR + Cu + Yb + Er + Tb <br />
 +
**[[4csp]] - AcNIR (mutant) + Zn + Cu <br />
*Cu-containing nitrite reductase binary complex
*Cu-containing nitrite reductase binary complex
Line 53: Line 59:
**[[2bwd]], [[2bwi]], [[5og2]], [[5og3]], [[5og4]], [[5og5]], [[5og6]], [[5ogf]], [[5ogg]], [[5of5]], [[5of6]], [[5of7]], [[5of8]], [[5ofc]], [[5ofd]], [[5ofe]], [[5off]], [[5ofg]], [[5ofh]], [[5i6k]], [[5i6m]], [[5i6o]], [[5akr]], [[6gb8]], [[6gbb]], [[6gby]], [[6gcg]], [[6gt0]], [[6gti]], [[6gtk]], [[6gtl]], [[6gtn]] - AcNIR + NO2 + Cu<br />
**[[2bwd]], [[2bwi]], [[5og2]], [[5og3]], [[5og4]], [[5og5]], [[5og6]], [[5ogf]], [[5ogg]], [[5of5]], [[5of6]], [[5of7]], [[5of8]], [[5ofc]], [[5ofd]], [[5ofe]], [[5off]], [[5ofg]], [[5ofh]], [[5i6k]], [[5i6m]], [[5i6o]], [[5akr]], [[6gb8]], [[6gbb]], [[6gby]], [[6gcg]], [[6gt0]], [[6gti]], [[6gtk]], [[6gtl]], [[6gtn]] - AcNIR + NO2 + Cu<br />
**[[4csz]] - AcNIR (mutant) + NO2 + Cu <br />
**[[4csz]] - AcNIR (mutant) + NO2 + Cu <br />
-
**[[4csp]] - AcNIR (mutant) + Zn + Cu <br />
+
**[[2y1a]], [[6zu6]], [[6zua]], [[6zub]], [[6zud]], [[6zut]] - AcNIR + NO + Cu<br />
-
**[[2y1a]] - AcNIR + NO + Cu<br />
+
**[[2dws]], [[2dwt]] - RsNIR + NO2 + Cu<br />
**[[2dws]], [[2dwt]] - RsNIR + NO2 + Cu<br />
**[[3wkp]], [[3x1n]] - GtNIR (mutant) + NO2 + Cu <br />
**[[3wkp]], [[3x1n]] - GtNIR (mutant) + NO2 + Cu <br />
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**[[5ytn]] - GtNIR (mutant) + H2O2 + Cu <br />
**[[5ytn]] - GtNIR (mutant) + H2O2 + Cu <br />
**[[6qpt]] – RpNIR + Cu + NO2 <br />
**[[6qpt]] – RpNIR + Cu + NO2 <br />
 +
**[[6zat]], [[6zax]], [[7zcn]], [[7zcs]] – BrNIR + Cu + NO2 <br />
 +
**[[7zco]], [[7zcp]], [[7zcq]] – BrNIR + Cu + NO + NO2 <br /
 +
**[[6zaw]] – BrNIR + Cu + NO <br />
 +
**[[6zau]] – BrNIR + Cu + NO2 + NO<br />
**[[6qpv]], [[6qpz]], [[6qq1]] – RpNIR (mutant) + Cu + heme <br />
**[[6qpv]], [[6qpz]], [[6qq1]] – RpNIR (mutant) + Cu + heme <br />
**[[6qpx]], [[6qq0]], [[6qq2]] – RpNIR (mutant) + Cu + heme + NO2<br />
**[[6qpx]], [[6qq0]], [[6qq2]] – RpNIR (mutant) + Cu + heme + NO2<br />
-
*'''Heme-containing nitrite reductase - (Cytochrome C-552)'''
+
*'''Heme-containing nitrite reductase - (Cytochrome C-552)''' see [[Cytochrome c nitrite reductase]]
-
 
+
-
**[[1aof]], [[1qks]], [[1hj4]], [[1hj5]], [[1h9x]], [[1hcm]] - PpNIR – ''Paracoccus pantotrophus''<br />
+
-
**[[1gq1]] - PpNIR (mutant)<br />
+
-
**[[1nir]], [[1bl9]], [[1n15]], [[1n50]], [[1n90]] – PaNIR – ''Pseudomonas aeruginosa''<br />
+
-
**[[1hzu]] - PaNIR (mutant)<br />
+
-
**[[1qdb]] - NIR – ''Sulfurospirillum deleyianum''<br />
+
-
**[[1fs7]], [[1fs8]] - WsNIR – ''Wolinella succinogenes''<br />
+
-
**[[3bng]] - WsNIR (mutant) <br />
+
-
**[[1gu6]], [[2rdz]], [[3tor]] – EcNIR – ''Escherichia coli''<br />
+
-
**[[2rf7]], [[4wjy]] - EcNIR (mutant) <br />
+
-
**[[2jo6]] – EcNIR small subunit – NMR<BR />
+
-
**[[2jza]] - NIR small subunit – ''Pectobacterium atrosepticum'' - NMR<BR />
+
-
**[[1oah]] – NIR – ''Desulfovibrio desulfuricans''<br />
+
-
**[[2j7a]] - DvNIR – ''Desulfovibrio vulgaris''<br />
+
-
**[[2ot4]], [[3gm6]], [[3fo3]], [[3sce]], [[3uu9]], [[4q0t]], [[4q17]], [[4q1o]], [[4q4u]], [[4q5b]], [[4q5c]] - TnNIR – ''Thioalkalivibrio nitratireducens''<br />
+
-
**[[3m97]] – PdNIR soluble domain – ''Paracoccus denitrificans''<br />
+
-
**[[2ai5]] – HtNIR – ''Hydrogenophilus thermophilus'' – NMR<BR />
+
-
**[[2d0s]], [[1ynr]], [[3vym]] – HtNIR<BR />
+
-
**[[1ayg]] – NIR - ''Hydrogenobacter thermoluteolus'' – NMR<BR />
+
-
**[[1i6d]], [[1i6e]], [[1c7m]] – PdNIR functional domain – NMR<BR />
+
-
**[[1ql3]], [[1ql4]] - PdNIR functional domain<BR />
+
-
**[[1dt1]], [[1qyz]], [[1r0q]], [[1c52]], [[3vnw]] – TtNIR – ''Thermus thermophilus''<BR />
+
-
**[[2fwl]] – TtNIR + NIR oxidase subunit II <BR />
+
-
**[[1cno]] – NIR – ''Pseudomonas nautica''<br />
+
-
**[[3ubr]] – SoNIR – ''Shewanella oneidensis''<br />
+
-
**[[3sqx]] – TpNIR – ''Thioalkalivibrio paradoxus''<br />
+
-
 
+
-
*Heme-containing nitrite reductase binary complex
+
-
 
+
-
**[[1dy7]] - PpNIR + CO<br />
+
-
**[[1hj3]] - PpNIR + O2<br />
+
-
**[[2e81]] - WsNIR + NH2OH<br />
+
-
**[[3bnf]] - WsNIR + sulfite <BR />
+
-
**[[2vr0]] - DvNIR + HQNO inhibitor<br />
+
-
**[[3ziy]], [[4ax3]], [[6fja]], [[6f1q]] – RpNIR + Cu – ''Ralstonia pickettii''<br />
+
-
**[[3ayf]] – NIR + Zn – ''Geobacillus stearothermophilus''<br />
+
-
**[[2yqb]], [[3zbm]] – RpNIR (mutant) + Cu <br />
+
-
**[[3o0r]] – PaNIR + antibody<br />
+
-
**[[5guw]] – PaNIR + nitric oxide reductase<br />
+
-
**[[3sxq]] – TpNIR + Co<br />
+
-
 
+
-
*Heme-containing nitrite reductase binary complex with cyanide
+
-
 
+
-
**[[1h9y]] - PpNIR + CN<br />
+
-
**[[1gjq]] - PaNIR + CN<br />
+
-
**[[1e2r]] - PdNIR+ CN <br />
+
-
 
+
-
*Heme-containing nitrite reductase binary complex with nitric oxide
+
-
 
+
-
**[[1nno]] - PaNIR + NO<br />
+
-
**[[1hzv]] - PaNIR (mutant) + NO<br />
+
-
**[[1aom]], [[1aoq]], [[5ocb]], [[5ocf]] - PpNIR + NO + NO2<br />
+
-
** [[5obo]] - PpNIR (mutant) + Cu + NO2<br />
+
-
 
+
-
*Heme-containing nitrite reductase binary complex with nitrite
+
-
 
+
-
**[[2e80]] - WsNIR + NO2<br />
+
-
**[[3bnh]] - WsNIR (mutant) + NO<br />
+
-
**[[3d1i]], [[3rkh]], [[3owm]], [[4l38]], [[4l3x]], [[4l3y]], [[4l3z]] - TnNIR + NO2
+
-
 
+
-
*Heme-containing nitrite reductase binary complex with azide
+
-
 
+
-
**[[2zo5]] - TnNIR + N3<br />
+
-
**[[3s7w]] - TnNIR + NO2 + N3<br />
+
-
**[[1fs9]] - WsNIR + N3
+
-
 
+
-
*Heme-containing nitrite reductase binary complex with sulfite
+
-
 
+
-
**[[3mmo]] - WsNIR + SO3<BR />
+
-
**[[3bnj]] - WsNIR (mutant) + SO3<BR />
+
-
**[[3lg1]], [[3lgq]], [[3f29]], [[3ttb]] - TnNIR + SO3<BR />
+
-
**[[3l1t]] - EcNIR + SO3<BR />
+
*'''Siroheme-containing assimilatory nitrite reductase'''
*'''Siroheme-containing assimilatory nitrite reductase'''

Current revision

3D structures of nitrite reductase

Updated on 18-July-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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