6uwe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 6uwe is ON HOLD Authors: Shabalin, I.G., Osipov, E., Tikhonova, T.V., Rakitina, T.V., Boyko, K.M., Popov, V.O. Description: Crystal structure of re...)
Current revision (07:59, 11 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6uwe is ON HOLD
+
==Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper==
 +
<StructureSection load='6uwe' size='340' side='right'caption='[[6uwe]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6uwe]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thioalkalivibrio_paradoxus_ARh_1 Thioalkalivibrio paradoxus ARh 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UWE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UWE FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uwe OCA], [https://pdbe.org/6uwe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uwe RCSB], [https://www.ebi.ac.uk/pdbsum/6uwe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uwe ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/W0DP94_9GAMM W0DP94_9GAMM]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Biocatalytic copper centers are generally involved in the activation and reduction of dioxygen, with only few exceptions known. Here we report the discovery and characterization of a previously undescribed copper center that forms the active site of a copper-containing enzyme thiocyanate dehydrogenase (suggested EC 1.8.2.7) that was purified from the haloalkaliphilic sulfur-oxidizing bacterium of the genus Thioalkalivibrio ubiquitous in saline alkaline soda lakes. The copper cluster is formed by three copper ions located at the corners of a near-isosceles triangle and facilitates a direct thiocyanate conversion into cyanate, elemental sulfur, and two reducing equivalents without involvement of molecular oxygen. A molecular mechanism of catalysis is suggested based on high-resolution three-dimensional structures, electron paramagnetic resonance (EPR) spectroscopy, quantum mechanics/molecular mechanics (QM/MM) simulations, kinetic studies, and the results of site-directed mutagenesis.
-
Authors: Shabalin, I.G., Osipov, E., Tikhonova, T.V., Rakitina, T.V., Boyko, K.M., Popov, V.O.
+
Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.,Tikhonova TV, Sorokin DY, Hagen WR, Khrenova MG, Muyzer G, Rakitina TV, Shabalin IG, Trofimov AA, Tsallagov SI, Popov VO Proc Natl Acad Sci U S A. 2020 Feb 24. pii: 1922133117. doi:, 10.1073/pnas.1922133117. PMID:32094184<ref>PMID:32094184</ref>
-
Description: Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Shabalin, I.G]]
+
<div class="pdbe-citations 6uwe" style="background-color:#fffaf0;"></div>
-
[[Category: Boyko, K.M]]
+
== References ==
-
[[Category: Popov, V.O]]
+
<references/>
-
[[Category: Rakitina, T.V]]
+
__TOC__
-
[[Category: Tikhonova, T.V]]
+
</StructureSection>
-
[[Category: Osipov, E]]
+
[[Category: Large Structures]]
 +
[[Category: Thioalkalivibrio paradoxus ARh 1]]
 +
[[Category: Boyko KM]]
 +
[[Category: Osipov E]]
 +
[[Category: Popov VO]]
 +
[[Category: Rakitina TV]]
 +
[[Category: Shabalin IG]]
 +
[[Category: Tikhonova TV]]

Current revision

Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper

PDB ID 6uwe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools