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| | <StructureSection load='1a7z' size='340' side='right'caption='[[1a7z]], [[Resolution|resolution]] 0.95Å' scene=''> | | <StructureSection load='1a7z' size='340' side='right'caption='[[1a7z]], [[Resolution|resolution]] 0.95Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1a7z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_fradiae Streptomyces fradiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A7Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A7Z FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1a7z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_fradiae Streptomyces fradiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A7Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A7Z FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BNZ:BENZENE'>BNZ</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.95Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CTH:4-CHLOROTHREONINE'>CTH</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=H5M:TRANS-3-HYDROXY-5-METHYLPROLINE'>H5M</scene>, <scene name='pdbligand=MAA:N-METHYL-L-ALANINE'>MAA</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=POM:CIS-5-METHYL-4-OXOPROLINE'>POM</scene>, <scene name='pdbligand=PXZ:2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE'>PXZ</scene>, <scene name='pdbligand=SAR:SARCOSINE'>SAR</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNZ:BENZENE'>BNZ</scene>, <scene name='pdbligand=CTH:4-CHLOROTHREONINE'>CTH</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=H5M:TRANS-3-HYDROXY-5-METHYLPROLINE'>H5M</scene>, <scene name='pdbligand=MAA:N-METHYL-L-ALANINE'>MAA</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=POM:CIS-5-METHYL-4-OXOPROLINE'>POM</scene>, <scene name='pdbligand=PRD_000009:Actinomycin+Z3'>PRD_000009</scene>, <scene name='pdbligand=PXZ:2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE'>PXZ</scene>, <scene name='pdbligand=SAR:SARCOSINE'>SAR</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[209d|209d]], [[1unm|1unm]], [[1i3w|1i3w]], [[1a7y|1a7y]], [[1fja|1fja]], [[173d|173d]], [[2d55|2d55]], [[1dsc|1dsc]], [[1l1v|1l1v]], [[316d|316d]], [[1dsd|1dsd]], [[1mnv|1mnv]], [[1unj|1unj]], [[1ovf|1ovf]], [[1qfi|1qfi]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a7z OCA], [https://pdbe.org/1a7z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a7z RCSB], [https://www.ebi.ac.uk/pdbsum/1a7z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a7z ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a7z OCA], [http://pdbe.org/1a7z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1a7z RCSB], [http://www.ebi.ac.uk/pdbsum/1a7z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1a7z ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| | [[Category: Streptomyces fradiae]] | | [[Category: Streptomyces fradiae]] |
| - | [[Category: Schafer, M]] | + | [[Category: Schafer M]] |
| - | [[Category: Actinomycin]]
| + | |
| - | [[Category: Actinomycin d]]
| + | |
| - | [[Category: Antibiotic]]
| + | |
| - | [[Category: Anticancer]]
| + | |
| - | [[Category: Antitumor]]
| + | |
| - | [[Category: Chromophore]]
| + | |
| - | [[Category: Depsipeptide]]
| + | |
| Structural highlights
1a7z is a 2 chain structure with sequence from Streptomyces fradiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Method: | X-ray diffraction, Resolution 0.95Å |
| Ligands: | , , , , , , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Publication Abstract from PubMed
Untwinned single crystals of the actinomycins D and Z3 that diffracted to atomic resolution could be obtained for the first time. Low-temperature data collection and a new ab initio method for solving the structures led to precise crystal structures which showed, for example, that the unit cell of actinomycin D contains three molecules, two of which are present in the form of a hydrogen-bridged dimer related by a pseudo-twofold axis (see picture).
Crystal Structures of Actinomycin D and Actinomycin Z3.,Schafer M, Sheldrick GM, Bahner I, Lackner H Angew Chem Int Ed Engl. 1998 Sep 18;37(17):2381-2384. doi:, 10.1002/(SICI)1521-3773(19980918)37:17<2381::AID-ANIE2381>3.0.CO;2-L. PMID:29710967[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Schafer M, Sheldrick GM, Bahner I, Lackner H. Crystal Structures of Actinomycin D and Actinomycin Z3. Angew Chem Int Ed Engl. 1998 Sep 18;37(17):2381-2384. doi:, 10.1002/(SICI)1521-3773(19980918)37:17<2381::AID-ANIE2381>3.0.CO;2-L. PMID:29710967 doi:<2381::AID-ANIE2381>3.0.CO;2-L http://dx.doi.org/10.1002/(SICI)1521-3773(19980918)37:17<2381::AID-ANIE2381>3.0.CO;2-L
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