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| <StructureSection load='1lhz' size='340' side='right'caption='[[1lhz]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='1lhz' size='340' side='right'caption='[[1lhz]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1lhz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LHZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LHZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1lhz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LHZ FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1jvk|1jvk]], [[1lgv|1lgv]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1lhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lhz OCA], [http://pdbe.org/1lhz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1lhz RCSB], [http://www.ebi.ac.uk/pdbsum/1lhz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1lhz ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lhz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lhz OCA], [https://pdbe.org/1lhz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lhz RCSB], [https://www.ebi.ac.uk/pdbsum/1lhz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lhz ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q6PJG0_HUMAN Q6PJG0_HUMAN] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| [[Category: Homo sapiens]] | | [[Category: Homo sapiens]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Bourne, P C]] | + | [[Category: Bourne PC]] |
- | [[Category: DeWitt, C R]] | + | [[Category: DeWitt CR]] |
- | [[Category: Edmundson, A B]] | + | [[Category: Edmundson AB]] |
- | [[Category: Ramsland, P A]] | + | [[Category: Ramsland PA]] |
- | [[Category: Terzyan, S S]] | + | [[Category: Terzyan SS]] |
- | [[Category: Human bence-jones dimer]]
| + | |
- | [[Category: Immune system]]
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- | [[Category: Induced fit]]
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- | [[Category: Microgravity crystallization]]
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| Structural highlights
Function
Q6PJG0_HUMAN
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Crystals of a human (Sea) Bence-Jones dimer were produced in a capillary by vapor diffusion under microgravity conditions in the 9 day US Space Shuttle Mission STS-95. In comparison to ground-based experiments, nucleation was facile and spontaneous in space. Appearance of a very large (8 x 1.6 x 1.0 mm) crystal in a short time period is a strong endorsement for the use of microgravity to produce crystals sufficiently large for neutron diffraction studies. The Sea dimer crystallized in the orthorhombic space group P2(1)2(1)2(1), with a = 48.9 A, b = 85.2 A, and c = 114.0 A. The crystals grown in microgravity exhibited significantly lower mosaicities than those of ground-based crystals and the X-ray diffraction data had a lower overall B factor. Three-dimensional structures determined by X-ray analysis at two temperatures (100 and 293 K) were indistinguishable from those obtained from ground-based crystals. However, both the crystallographic R factor and the free R factor were slightly lower in the models derived from crystals produced in microgravity. The major difference between the two crystal growth systems is a lack of convection and sedimentation in a microgravity environment. This environment resulted in the growth of much larger, higher-quality crystals of the Sea Bence-Jones protein. Structurally, heretofore unrecognized grooves on the external surfaces of the Sea and other immunoglobulin-derived fragments are regular features and may offer supplementary binding regions for super antigens and other elongated ligands in the bloodstream and perivascular tissues.
Comparison of the three-dimensional structures of a human Bence-Jones dimer crystallized on Earth and aboard US Space Shuttle Mission STS-95.,Terzyan SS, Bourne CR, Ramsland PA, Bourne PC, Edmundson AB J Mol Recognit. 2003 Mar-Apr;16(2):83-90. PMID:12720277[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Terzyan SS, Bourne CR, Ramsland PA, Bourne PC, Edmundson AB. Comparison of the three-dimensional structures of a human Bence-Jones dimer crystallized on Earth and aboard US Space Shuttle Mission STS-95. J Mol Recognit. 2003 Mar-Apr;16(2):83-90. PMID:12720277 doi:10.1002/jmr.610
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