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| | <StructureSection load='5hpj' size='340' side='right'caption='[[5hpj]], [[Resolution|resolution]] 1.50Å' scene=''> | | <StructureSection load='5hpj' size='340' side='right'caption='[[5hpj]], [[Resolution|resolution]] 1.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5hpj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phopr Phopr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HPJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HPJ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5hpj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photobacterium_profundum_SS9 Photobacterium profundum SS9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HPJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HPJ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EBIG1812, PBPRA3376 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=298386 PHOPR])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hpj OCA], [http://pdbe.org/5hpj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hpj RCSB], [http://www.ebi.ac.uk/pdbsum/5hpj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hpj ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hpj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hpj OCA], [https://pdbe.org/5hpj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hpj RCSB], [https://www.ebi.ac.uk/pdbsum/5hpj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hpj ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q6LM17_PHOPR Q6LM17_PHOPR] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Phopr]] | + | [[Category: Photobacterium profundum SS9]] |
| - | [[Category: Buhrman, G]] | + | [[Category: Buhrman G]] |
| - | [[Category: Somalinga, V]] | + | [[Category: Somalinga V]] |
| - | [[Category: Alpha class]]
| + | |
| - | [[Category: Carbonic anhydrase]]
| + | |
| - | [[Category: Lyase]]
| + | |
| - | [[Category: Psychrophile]]
| + | |
| Structural highlights
Function
Q6LM17_PHOPR
Publication Abstract from PubMed
Bacterial alpha-carbonic anhydrases (alpha-CA) are zinc containing metalloenzymes that catalyze the rapid interconversion of CO2 to bicarbonate and a proton. We report the first crystal structure of a pyschrohalophilic alpha-CA from a deep-sea bacterium, Photobacterium profundum. Size exclusion chromatography of the purified P. profundum alpha-CA (PprCA) reveals that the protein is a heterogeneous mix of monomers and dimers. Furthermore, an "in-gel" carbonic anhydrase activity assay, also known as protonography, revealed two distinct bands corresponding to monomeric and dimeric forms of PprCA that are catalytically active. The crystal structure of PprCA was determined in its native form and reveals a highly conserved "knot-topology" that is characteristic of alpha-CA's. Similar to other bacterial alpha-CA's, PprCA also crystallized as a dimer. Furthermore, dimer interface analysis revealed the presence of a chloride ion (Cl-) in the interface which is unique to PprCA and has not been observed in any other alpha-CA's characterized so far. Molecular dynamics simulation and chloride ion occupancy analysis shows 100% occupancy for the Cl- ion in the dimer interface. Zinc coordinating triple histidine residues, substrate binding hydrophobic patch residues, and the hydrophilic proton wire residues are highly conserved in PprCA and are identical to other well-studied alpha-CA's.
A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface.,Somalinga V, Buhrman G, Arun A, Rose RB, Grunden AM PLoS One. 2016 Dec 9;11(12):e0168022. doi: 10.1371/journal.pone.0168022., eCollection 2016. PMID:27936100[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Somalinga V, Buhrman G, Arun A, Rose RB, Grunden AM. A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface. PLoS One. 2016 Dec 9;11(12):e0168022. doi: 10.1371/journal.pone.0168022., eCollection 2016. PMID:27936100 doi:http://dx.doi.org/10.1371/journal.pone.0168022
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