6cdk

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Current revision (15:01, 4 October 2023) (edit) (undo)
 
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<StructureSection load='6cdk' size='340' side='right'caption='[[6cdk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='6cdk' size='340' side='right'caption='[[6cdk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6cdk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5ijy 5ijy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CDK FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6cdk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii Azotobacter vinelandii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5ijy 5ijy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CDK FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CLF:FE(8)-S(7)+CLUSTER'>CLF</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HCA:3-HYDROXY-3-CARBOXY-ADIPIC+ACID'>HCA</scene>, <scene name='pdbligand=ICS:IRON-SULFUR-MOLYBDENUM+CLUSTER+WITH+INTERSTITIAL+CARBON'>ICS</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrogenase Nitrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.6.1 1.18.6.1] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLF:FE(8)-S(7)+CLUSTER'>CLF</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HCA:3-HYDROXY-3-CARBOXY-ADIPIC+ACID'>HCA</scene>, <scene name='pdbligand=ICS:IRON-SULFUR-MOLYBDENUM+CLUSTER+WITH+INTERSTITIAL+CARBON'>ICS</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cdk OCA], [http://pdbe.org/6cdk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cdk RCSB], [http://www.ebi.ac.uk/pdbsum/6cdk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cdk ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cdk OCA], [https://pdbe.org/6cdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cdk RCSB], [https://www.ebi.ac.uk/pdbsum/6cdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cdk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/NIFD_AZOVI NIFD_AZOVI]] This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation. [[http://www.uniprot.org/uniprot/NIFK_AZOVI NIFK_AZOVI]] This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation.
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[https://www.uniprot.org/uniprot/NIFD_AZOVI NIFD_AZOVI] This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation.
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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[[Category: Azotobacter vinelandii]]
[[Category: Azotobacter vinelandii]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Nitrogenase]]
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[[Category: Danyal K]]
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[[Category: Danyal, K]]
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[[Category: Eilers BJ]]
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[[Category: Eilers, B J]]
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[[Category: Keable SM]]
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[[Category: Keable, S M]]
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[[Category: LeVan AX]]
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[[Category: LeVan, A X]]
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[[Category: Peters JW]]
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[[Category: Peters, J W]]
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[[Category: Prussia GA]]
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[[Category: Prussia, G A]]
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[[Category: Rasmussen AJ]]
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[[Category: Rasmussen, A J]]
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[[Category: Seefeldt LC]]
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[[Category: Seefeldt, L C]]
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[[Category: Zadvornyy OA]]
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[[Category: Zadvornyy, O A]]
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[[Category: Electron transport]]
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[[Category: Metalloprotein]]
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[[Category: Nitrogen fixation]]
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[[Category: Oxidoreductase]]
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[[Category: P-cluster of mofe protein]]
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[[Category: Poised state]]
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[[Category: Redox mediator]]
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Current revision

Characterization of the P1+ intermediate state of nitrogenase P-cluster

PDB ID 6cdk

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