Proteinase 3D structures

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(New page: ==3D structures of proteinase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *'''Proteinase A or saccharopepsin'...)
Current revision (09:52, 17 December 2023) (edit) (undo)
 
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*'''Proteinase B'''
*'''Proteinase B'''
-
**[[3sgb]] – SgPRO + turkey ovomucoid inhibitor<br />
+
**[[1cso]], [[1ct0]], [[1ct2]], [[1ct4]], [[1ds2]], [[1sgd]], [[1sge]], [[1sgn]], [[1sgp]], [[1sgq]], [[1sgr]], [[1sgy]], [[2nu3]], [[2nu4]], [[2sgd]], [[2sge]], [[2sgp]], [[2sgq]], [[2sgf]], [[3sgb]], [[3sgq]] – SgPRO + turkey ovomucoid inhibitor>נר .<
-
**[[1sgp]], [[1sgq]], [[1sgr]], [[1cso]], [[1ct0]], [[1ct2]], [[1ct4]], [[1ds2]], [[2sgp]], [[2nu3]], [[2nu4]] – SgPRO + turkey ovomucoid inhibitor (mutant)<br />
+
**[[4sgb]] - SgPRO + potato inhibitor
**[[4sgb]] - SgPRO + potato inhibitor
*'''Proteinase K'''
*'''Proteinase K'''
-
**[[2prk]], [[1cnm]], [[1egq]], [[2id8]], [[2g4v]], [[2v8b]], [[3gt3]], [[3gt4]], [[3d9q]], [[3ddz]], [[3de0]] , [[3de1]], [[3de2]], [[3de3]], [[3de4]], [[3de5]], [[3de6]], [[3de7]], [[3dvq]], [[3dvr]], [[3dvs]], [[3dw1]], [[3dw3]], [[3dwe]], [[3i2y]], [[3i30]], [[3i37]], [[3i34]], [[3l1k]], [[3aj8]], [[3aj9]], [[3q40]], [[3q5g]], [[3qmp]], [[4b5l]], [[4fon]], [[6rzp]], [[6qf1]], [[6pu5]], [[6pu4]], [[6pkt]], [[6pks]], [[6pkr]], [[6pkq]], [[6pkp]], [[6pko]], [[6pkn]], [[6pkm]], [[6pkl]], [[6pkk]], [[6pkj]], [[6n4u]], [[6mh6]], [[6fjs]], [[6clb]], [[6cla]], [[6cl9]], [[6cl8]], [[6cl7]], [[5wjh]], [[5wjg]], [[5whw]], [[5uvl]] – EaPRO + Ca – ''Engyodontium album'' <br />
+
**[[2prk]], [[1cnm]], [[1egq]], [[2id8]], [[2g4v]], [[2v8b]], [[3gt3]], [[3gt4]], [[3d9q]], [[3ddz]], [[3de0]], [[3de1]], [[3de2]], [[3de3]], [[3de4]], [[3de5]], [[3de6]], [[3de7]], [[3dvq]], [[3dvr]], [[3dvs]], [[3dw1]], [[3dw3]], [[3dwe]], [[3i2y]], [[3i30]], [[3i37]], [[3i34]], [[3l1k]], [[3aj8]], [[3aj9]], [[3q40]], [[3q5g]], [[3qmp]], [[4b5l]], [[4fon]], [[6rzp]], [[6qf1]], [[6pu5]], [[6pu4]], [[6n4u]], [[6mh6]], [[6fjs]], [[6clb]], [[6cla]], [[6cl9]], [[6cl8]], [[6cl7]], [[5wjh]], [[5wjg]], [[5whw]], [[5uvl]], [[6j43]], [[6k2p]], [[6k2r]], [[6k2s]], [[6k2t]], [[6k2v]], [[6k2w]], [[6pq0]], [[6pq4]], [[6v8r]], [[7c0p]], [[7nuz]], [[7s4z]], [[8f05]], [[8f06]], [[8f07]], [[8sog]], [[8sqv]] – EaPRO + Ca – ''Engyodontium album'' <br />
 +
**[[7ln7]], [[7lpt]], [[7lpu]], [[7lpv]], [[7lq8]], [[7lq9]], [[7lqa]], [[7lqb]], [[7lqc]], [[7ltd]], [[7lti]], [[7ltv]], [[7lu0]], [[7lu1]], [[7lu2]], [[7lu3]] - EaPRO + Ca – radiation damage<br />
**[[1ic6]], [[6qxv]] – EaPRO (mutant) + Ca <br />
**[[1ic6]], [[6qxv]] – EaPRO (mutant) + Ca <br />
**[[1ptk]], [[1ht3]] – EaPRO + Ca + Hg <br />
**[[1ptk]], [[1ht3]] – EaPRO + Ca + Hg <br />
-
**[[2pkc]] – EaPRO + Na <br />
+
**[[2pkc]], [[7a68]] – EaPRO + Na <br />
-
**[[5wrc]] – EaPRO + Pr <br />
+
**[[5wrc]], [[6k2x]] – EaPRO + Pr <br />
-
**[[4dj5]], [[4woc]], [[4wob]] – EaPRO <br />
+
**[[6txg]] – EaPRO + Ru <br />
 +
**[[4dj5]], [[4woc]], [[4wob]], [[7njj]], [[7nuy]] – EaPRO <br />
 +
**[[6clb]], [[6cla]], [[6cl9]], [[6cl8]], [[6cl7]], [[6pkt]], [[6pks]], [[6pkr]], [[6pkq]], [[6pkp]], [[6pko]], [[6pkn]], [[6pkm]], [[6pkl]], [[6pkk]], [[6pkj]], [[6law]], [[6zet]], [[6zeu]], [[6zev]]ת [[7skx]], [[7svy]], [[7svz]], [[7sw0]], [[7sw1]], [[7sw2]], [[7sw3]], [[7sw4]], [[7sw5]], [[7sw6]], [[7sw7]], [[7sw8]], [[7sw9]], [[7swa]], [[7swb]], [[7swc]], [[8sdk]], [[8e52]], [[8e53]], [[8fyo]], [[8fyp]], [[8fyq]], [[8fyr]], [[8fys]] – EaPRO - MicroED <br />
*Proteinase K complex with peptide
*Proteinase K complex with peptide
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**[[1pek]], [[1pfg]], [[4zar]] – EaPRO + peptide inhibitor <br />
**[[1pek]], [[1pfg]], [[4zar]] – EaPRO + peptide inhibitor <br />
**[[1pj8]] – EaPRO + Hg + substrate analog peptide <br />
**[[1pj8]] – EaPRO + Hg + substrate analog peptide <br />
-
**[[2hpz]], [[2pq2]], [[6kkf]] – EaPRO + Ca + peptide <br />
+
**[[2hpz]], [[2pq2]], [[6kkf]]ת [[8sou]], [[8sov]], [[8spl]] – EaPRO + Ca + peptide <br />
**[[3osz]] – EaPRO + Ca + antimicrobial peptide <br />
**[[3osz]] – EaPRO + Ca + antimicrobial peptide <br />
**[[2b6n]] – PRO + tripeptide - ''Serratia''<br />
**[[2b6n]] – PRO + tripeptide - ''Serratia''<br />
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**[[1oyo]] – EaPRO + Ca + melanin monomer <br />
**[[1oyo]] – EaPRO + Ca + melanin monomer <br />
**[[3dyb]] – EaPRO + Ca + digalacturonic acid <br />
**[[3dyb]] – EaPRO + Ca + digalacturonic acid <br />
-
**[[6rvg]], [[6rve]], [[6ruw]], [[6run]], [[6ruk]], [[6ruh]], [[6rug]] – EaPRO + keggin derivative <br />
+
**[[6rvg]], [[6rve]], [[6ruw]], [[6run]], [[6ruk]], [[6ruh]], [[6rug]], [[7a9f]], [[7a9k]], [[7a9m]] – EaPRO + keggin derivative <br />
 +
**[[6k8m]] – EaPRO + urea derivative <br />
 +
**[[7jsy]] – EaPRO + triiodoisophthalate derivative - MicroED<br />
*'''Proteinase 3C'''
*'''Proteinase 3C'''
-
**[[1qa7]] – PRO – Hepatitis virus<br />
+
**[[1hav]], [[1qa7]] – hvPRO – Hepatitis virus<br />
-
**[[2vb0]], [[3zyd]] - PRO – Coxsakievirus<br />
+
**[[2h6m]], [[2h9h]], [[2hal]] – hvPRO + peptide inhibitor<br />
-
**[[3zye]] – csvPRO (mutant) <br />
+
**[[2vb0]], [[2zu3]], [[2zty]], [[2ztz]], [[3zyd]] - PRO – Coxsakievirus<br />
 +
**[[2zu1]], [[3zye]] – csvPRO (mutant) <br />
 +
**[[2ztx]] – csvPRO + inhibitor <br />
**[[3zzd]], [[3zzc]], [[3zza]], [[3zzb]], [[3zz8]], [[3zz9]], [[3zz7]], [[3zz5]], [[3zz3]], [[3zz4]] – csvPRO (mutant) + inhibitor <br />
**[[3zzd]], [[3zzc]], [[3zza]], [[3zzb]], [[3zz8]], [[3zz9]], [[3zz7]], [[3zz5]], [[3zz3]], [[3zz4]] – csvPRO (mutant) + inhibitor <br />
**[[4ghq]] – hevPRO <br />
**[[4ghq]] – hevPRO <br />
**[[4ght]] – hevPRO + common cold drug <br />
**[[4ght]] – hevPRO + common cold drug <br />
 +
**[[4ghq]] – evPRO - Enterovirus <br />
 +
**[[4ght]], [[5c1u]], [[5c1x]], [[5c1y]], [[5c20]], [[5dp3]] [[5dp4]], [[5dp5]], [[5dp6]], [[5dp7]], [[5dp8]], [[5dp9]], [[5dpa]], [[6lka]], [[7dnc]] – evPRO + inhibitor<br />
 +
**[[5hm2]] – PRO - Foot-and-mouth virus <br />
 +
**[[1l1n]] – PRO - polio virus <br />
 +
 +
*PRO 3C-like see [[Virus protease]]
 +
 +
*Thermostable neutral proteinase see [[Thermolysin]]
*'''H2-Proteinase'''
*'''H2-Proteinase'''
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**[[1fq4]] - yPRO + inhibitor<br />
**[[1fq4]] - yPRO + inhibitor<br />
**[[2asi]] – PRO – ''Rhizomucor miehei''<br />
**[[2asi]] – PRO – ''Rhizomucor miehei''<br />
-
**[[1zap]] – CaPRO – ''Candida albicans''<br />
+
**[[1zap]], [[2h6s]] – CaPRO – ''Candida albicans''<br />
**[[1eag]] – CaPRO + inhibitor <br />
**[[1eag]] – CaPRO + inhibitor <br />
 +
**[[4ybf]] – PRO – ''Candida parasilosis''<br />
**[[1izd]] - AoPRO – ''Aspergillus oryzae''<br />
**[[1izd]] - AoPRO – ''Aspergillus oryzae''<br />
**[[1ize]] - AoPRO + polypeptide-statin inhibitor<br />
**[[1ize]] - AoPRO + polypeptide-statin inhibitor<br />
**[[1j71]] - PRO + polypeptide inhibitor – ''Candida tropicalis''<br />
**[[1j71]] - PRO + polypeptide inhibitor – ''Candida tropicalis''<br />
-
**[[1wkr]] - PRO + polypeptide-statin inhibitor – ''Irpex lacteus''
+
**[[1wkr]] - PRO + polypeptide-statin inhibitor – ''Irpex lacteus''<br />
 +
**[[3apr]] - PRO + polypeptide inhibitor – ''Rhizopus chinesis''<br />
 +
**[[1epl]], [[1epm]], [[2er0]], [[2er9]], [[4er4]] - fuPRO + polypeptide inhibitor – fungus<br />
 +
**[[1epo]], [[1epp]], [[1epq]] - fuPRO + intermediate<br />
 +
**[[3emy]] - PRO + pepstatin – ''Hypocrea jecorina<''br />
 +
**[[1mpp]] - PRO – ''Mucor pusillus''<br />
 +
**[[3c9x]] - PRO – ''Trichoderma reesei''<br />
 +
 
 +
*Aspartic PRO from Plasmodium vivax see [[Plasmepsin]]
*'''Cysteine Proteinase''' or '''gingipain'''
*'''Cysteine Proteinase''' or '''gingipain'''
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**[[2hrv]] – PRO 2A – human rhinovirus<br />
**[[2hrv]] – PRO 2A – human rhinovirus<br />
**[[3m1h]], [[4itc]] – PgPRO adhesion domain residues 982-1154 – ''Porphyromonas gingivalis'' <br />
**[[3m1h]], [[4itc]] – PgPRO adhesion domain residues 982-1154 – ''Porphyromonas gingivalis'' <br />
-
**[[4rbm]], [[4tkx]] – PgPRO catalytic domain residues 229-683<br />
+
**[[1cvr]], [[4rbm]], [[4tkx]] – PgPRO catalytic domain residues 229-683<br />
**[[6i9a]] – PgPRO catalytic domain + inhibitor<br />
**[[6i9a]] – PgPRO catalytic domain + inhibitor<br />
**[[5mun]] – PgPRO residues 20-228 <br />
**[[5mun]] – PgPRO residues 20-228 <br />
**[[2fo5]] – PRO residues 133-356 + leupeptin – ''Hordenum vulgare'' <br />
**[[2fo5]] – PRO residues 133-356 + leupeptin – ''Hordenum vulgare'' <br />
-
**[[1x9y]] – SaPRO – ''Staphylococcus aureus'' <br />
+
**[[1cv8]], [[1x9y]] – SaPRO – ''Staphylococcus aureus'' <br />
**[[1y4h]], [[1pxv]] – SaPRO + PRO inhibitor <br />
**[[1y4h]], [[1pxv]] – SaPRO + PRO inhibitor <br />
 +
**[[6p4e]] – PRO B (mutant) – ''Leishmania mexicana'' <br />
 +
**[[1z8r]] – csvPRO <br />
*'''Serine Proteinase'''
*'''Serine Proteinase'''
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**[[5m3n]], [[1lcy]] – hPRO HTRA2 – human <br />
**[[5m3n]], [[1lcy]] – hPRO HTRA2 – human <br />
**[[5fht]], [[5m3o]], [[5tny]], [[5tnz]], [[5to0]], [[5to1]], [[5wyn]] – hPRO HTRA2 (mutant) <br />
**[[5fht]], [[5m3o]], [[5tny]], [[5tnz]], [[5to0]], [[5to1]], [[5wyn]] – hPRO HTRA2 (mutant) <br />
 +
**[[1toc]] – PRO – bovine <br />
**[[3s9a]], [[3s9b]] – RvPRO – Siamese Russell’s viper<br />
**[[3s9a]], [[3s9b]] – RvPRO – Siamese Russell’s viper<br />
**[[3s9c]], [[3sbk]] – RvPRO + human factor V polypeptide<br />
**[[3s9c]], [[3sbk]] – RvPRO + human factor V polypeptide<br />
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**[[6m8w]], [[6m8y]], [[6m8f]], [[6m9c]], [[6m9d]] - PsPRO + polypeptide inhibitor<br />
**[[6m8w]], [[6m8y]], [[6m8f]], [[6m9c]], [[6m9d]] - PsPRO + polypeptide inhibitor<br />
**[[1s2n]], [[1sh7]] – PRO – ''Vibrio''<br />
**[[1s2n]], [[1sh7]] – PRO – ''Vibrio''<br />
 +
**[[2sfa]] – PRO – ''Streptomyces fradiae'' <br />
*'''Astacin'''
*'''Astacin'''
-
**[[6saz]], [[6ht9]] – Ast + fetuin-B – crayfish <br />
+
**[[1ast]] – Ast – crayfish <br />
 +
**[[6saz]], [[6ht9]] – Ast + fetuin-B <br />
 +
**[[1qjj]] – Ast + peptide inhibitor <br />
 +
**[[1qji]] – Ast + inhibitor <br />
 +
**[[1iaa]], [[1iab]], [[1iac]], [[1iad]], [[1iae]] – Ast + metal ion<br />
 +
**[[3lq0]] – Pro-Ast (mutant)<br />
}}
}}
[[Category: Topic Page]]
[[Category: Topic Page]]

Current revision

3D structures of proteinase

Updated on 17-December-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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