6b9r

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Current revision (14:21, 13 March 2024) (edit) (undo)
 
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<StructureSection load='6b9r' size='340' side='right'caption='[[6b9r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='6b9r' size='340' side='right'caption='[[6b9r]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6b9r]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_gibsoni"_(sic)_dodge_1935 "actinomyces gibsoni" (sic) dodge 1935]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B9R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6B9R FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6b9r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_albus Streptomyces albus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B9R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6B9R FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2HE:(2-HYDROXYETHYL)PHOSPHONIC+ACID'>2HE</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.802&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6b9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b9r OCA], [http://pdbe.org/6b9r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6b9r RCSB], [http://www.ebi.ac.uk/pdbsum/6b9r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6b9r ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2HE:(2-HYDROXYETHYL)PHOSPHONIC+ACID'>2HE</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6b9r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b9r OCA], [https://pdbe.org/6b9r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6b9r RCSB], [https://www.ebi.ac.uk/pdbsum/6b9r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6b9r ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Methylphosphonate synthase (MPnS) produces methylphosphonate, a metabolic precursor to methane in the upper ocean. Here, we determine a 2.35-angstrom resolution structure of MPnS and discover that it has an unusual 2-histidine-1-glutamine iron-coordinating triad. We further solve the structure of a related enzyme, hydroxyethylphosphonate dioxygenase from Streptomyces albus (SaHEPD), and find that it displays the same motif. SaHEPD can be converted into an MPnS by mutation of glutamine-adjacent residues, identifying the molecular requirements for methylphosphonate synthesis. Using these sequence markers, we find numerous putative MPnSs in marine microbiomes and confirm that MPnS is present in the abundant Pelagibacter ubique. The ubiquity of MPnS-containing microbes supports the proposal that methylphosphonate is a source of methane in the upper, aerobic ocean, where phosphorus-starved microbes catabolize methylphosphonate for its phosphorus.
 
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Structural basis for methylphosphonate biosynthesis.,Born DA, Ulrich EC, Ju KS, Peck SC, van der Donk WA, Drennan CL Science. 2017 Dec 8;358(6368):1336-1339. doi: 10.1126/science.aao3435. PMID:29217579<ref>PMID:29217579</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6b9r" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Born, D A]]
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[[Category: Streptomyces albus]]
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[[Category: Drennan, C L]]
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[[Category: Born DA]]
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[[Category: Hydroxymethylphosphonate]]
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[[Category: Drennan CL]]
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[[Category: Iron]]
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[[Category: Oxidoreductase]]
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[[Category: Phosphonate]]
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Current revision

Streptomyces albus HEPD with substrate 2-hydroxyethylphosphonate (2-HEP) and Fe(II) bound

PDB ID 6b9r

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