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| | <StructureSection load='6ba9' size='340' side='right'caption='[[6ba9]], [[Resolution|resolution]] 1.40Å' scene=''> | | <StructureSection load='6ba9' size='340' side='right'caption='[[6ba9]], [[Resolution|resolution]] 1.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6ba9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BA9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BA9 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6ba9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BA9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BA9 FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6ba8|6ba8]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">irp4, srfAD, A4T40_14730, AML07_28155, AUS26_21405, AW106_20985, ECONIH1_11380, ERS085406_04094, ERS150876_03959, FORC28_2175, MS6198_22290, SK85_02209, WM48_10340 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ba9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ba9 OCA], [https://pdbe.org/6ba9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ba9 RCSB], [https://www.ebi.ac.uk/pdbsum/6ba9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ba9 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ba9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ba9 OCA], [http://pdbe.org/6ba9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ba9 RCSB], [http://www.ebi.ac.uk/pdbsum/6ba9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ba9 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A061LQM0_ECOLX A0A061LQM0_ECOLX] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacillus coli migula 1895]] | + | [[Category: Escherichia coli]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Brett, T J]] | + | [[Category: Brett TJ]] |
| - | [[Category: Henderson, J P]] | + | [[Category: Henderson JP]] |
| - | [[Category: Kober, D L]] | + | [[Category: Kober DL]] |
| - | [[Category: Ohlemacher, S I]] | + | [[Category: Ohlemacher SI]] |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Non-ribosomal peptide synthesis]]
| + | |
| - | [[Category: Sideraphore synthesis]]
| + | |
| - | [[Category: Thioesterase]]
| + | |
| - | [[Category: Yersiniabactin]]
| + | |
| Structural highlights
Function
A0A061LQM0_ECOLX
Publication Abstract from PubMed
Clinical isolates of Yersinia, Klebsiella, and Escherichia coli frequently secrete the small molecule metallophore yersiniabactin (Ybt), which passivates and scavenges transition metals during human infections. YbtT is encoded within the Ybt biosynthetic operon and is critical for full Ybt production in bacteria. However, its biosynthetic function has been unclear because it is not essential for Ybt production by the in vitro reconstituted nonribosomal peptide synthetase/polyketide synthase (NRPS/PKS) pathway. Here, we report the structural and biochemical characterization of YbtT. YbtT structures at 1.4-1.9 A resolution possess a serine hydrolase catalytic triad and an associated substrate chamber with features similar to those previously reported for low-specificity type II thioesterases (TEIIs). We found that YbtT interacts with the two major Ybt biosynthetic proteins, HMWP1 and HMWP2, and hydrolyzes a variety of aromatic and acyl groups from their phosphopantetheinylated carrier protein domains. In vivo YbtT titration in uropathogenic E. coli revealed a distinct optimum for Ybt production consistent with a tradeoff between clearing both stalled, inhibitory intermediates and productive Ybt precursors from HMWP1 and HMWP2. These results are consistent with a model in which YbtT maintains cellular Ybt biosynthesis by removing non-productive, inhibitory thioesters that form aberrantly at multiple sites on HMWP1 and HMWP2.
YbtT is a low-specificity type II thioesterase that maintains production of the metallophore yersiniabactin in pathogenic enterobacteria.,Ohlemacher SI, Xu Y, Kober DL, Malik M, Nix JC, Brett TJ, Henderson JP J Biol Chem. 2018 Oct 24. pii: RA118.005752. doi: 10.1074/jbc.RA118.005752. PMID:30355735[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Ohlemacher SI, Xu Y, Kober DL, Malik M, Nix JC, Brett TJ, Henderson JP. YbtT is a low-specificity type II thioesterase that maintains production of the metallophore yersiniabactin in pathogenic enterobacteria. J Biol Chem. 2018 Oct 24. pii: RA118.005752. doi: 10.1074/jbc.RA118.005752. PMID:30355735 doi:http://dx.doi.org/10.1074/jbc.RA118.005752
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