|
|
(2 intermediate revisions not shown.) |
Line 1: |
Line 1: |
| | | |
| ==COAGULATION FACTOR, NMR, 15 STRUCTURES== | | ==COAGULATION FACTOR, NMR, 15 STRUCTURES== |
- | <StructureSection load='1whf' size='340' side='right'caption='[[1whf]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | + | <StructureSection load='1whf' size='340' side='right'caption='[[1whf]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1whf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WHF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1whf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WHF FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BHD:(3S)-3-HYDROXY-L-ASPARTIC+ACID'>BHD</scene>, <scene name='pdbligand=CGU:GAMMA-CARBOXY-GLUTAMIC+ACID'>CGU</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 15 models</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coagulation_factor_Xa Coagulation factor Xa], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.6 3.4.21.6] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BHD:(3S)-3-HYDROXY-L-ASPARTIC+ACID'>BHD</scene>, <scene name='pdbligand=CGU:GAMMA-CARBOXY-GLUTAMIC+ACID'>CGU</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1whf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1whf OCA], [http://pdbe.org/1whf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1whf RCSB], [http://www.ebi.ac.uk/pdbsum/1whf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1whf ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1whf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1whf OCA], [https://pdbe.org/1whf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1whf RCSB], [https://www.ebi.ac.uk/pdbsum/1whf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1whf ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/FA10_BOVIN FA10_BOVIN]] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting. | + | [https://www.uniprot.org/uniprot/FA10_BOVIN FA10_BOVIN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 27: |
Line 27: |
| </StructureSection> | | </StructureSection> |
| [[Category: Bos taurus]] | | [[Category: Bos taurus]] |
- | [[Category: Coagulation factor Xa]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Drakenberg, T]] | + | [[Category: Drakenberg T]] |
- | [[Category: Forsen, S]] | + | [[Category: Forsen S]] |
- | [[Category: Olah, G A]] | + | [[Category: Olah GA]] |
- | [[Category: Stenflo, J]] | + | [[Category: Stenflo J]] |
- | [[Category: Sunnerhagen, M]] | + | [[Category: Sunnerhagen M]] |
- | [[Category: Trewhella, J]] | + | [[Category: Trewhella J]] |
- | [[Category: Blood coagulation factor]]
| + | |
- | [[Category: Glycoprotein]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Plasma]]
| + | |
- | [[Category: Serine protease]]
| + | |
| Structural highlights
Function
FA10_BOVIN Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting.
Publication Abstract from PubMed
Coagulation factor X is a serine protease containing three noncatalytic domains: an N-terminal gamma-carboxyglutamic acid (Gla)1 domain followed by two epidermal growth factor (EGF)-like domains. The isolated N-terminal EGF domain binds Ca2+ with a Kd of 10(-3) M. When linked to the Gla domain, however, its Ca2+ affinity is increased 10-fold. In this paper, we present the NMR solution structure of the factor X Gla-EGF domain pair with Ca2+ bound to the EGF domain, as well as small angle X-ray scattering (SAXS) data on the Gla-EGF domain pair with and without Ca2+. Our results show that Ca2+ binding to the EGF domain makes the Gla and EGF domains fold toward each other using the Ca2+ site as a hinge. Presumably, a similar mechanism may be responsible for alterations in the relative orientation of protein domains in many other extracellular proteins containing EGF domains with the consensus for Ca2+ binding. The results of the NMR and SAXS measurements reported in this paper confirm our previous result that the Gla domain is folded also in its apo state when linked to the EGF domain [Sunnerhagen, M., et al. (1995) Nat. Struct. Biol. 2, 504-509]. Finally, our study clearly demonstrates the powerful combination of NMR and SAXS in the study of modular proteins, since this enables reliable evaluation of both short-range (NMR) and long-range interactions (SAXS).
The relative orientation of Gla and EGF domains in coagulation factor X is altered by Ca2+ binding to the first EGF domain. A combined NMR-small angle X-ray scattering study.,Sunnerhagen M, Olah GA, Stenflo J, Forsen S, Drakenberg T, Trewhella J Biochemistry. 1996 Sep 10;35(36):11547-59. PMID:8794734[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Sunnerhagen M, Olah GA, Stenflo J, Forsen S, Drakenberg T, Trewhella J. The relative orientation of Gla and EGF domains in coagulation factor X is altered by Ca2+ binding to the first EGF domain. A combined NMR-small angle X-ray scattering study. Biochemistry. 1996 Sep 10;35(36):11547-59. PMID:8794734 doi:10.1021/bi960633j
|