6nac

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:48, 11 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='6nac' size='340' side='right'caption='[[6nac]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
<StructureSection load='6nac' size='340' side='right'caption='[[6nac]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6nac]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NAC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NAC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6nac]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NAC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NAC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=402:DICARBONYL[BIS(CYANIDE-KAPPAC)]-MU-(IMINODIMETHANETHIOLATATO-1KAPPAS 2KAPPAS)-MU-(OXOMETHYLIDENE)DIIRON(2+)'>402</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6n59|6n59]], [[6n6p|6n6p]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=402:DICARBONYL[BIS(CYANIDE-KAPPAC)]-MU-(IMINODIMETHANETHIOLATATO-1KAPPAS 2KAPPAS)-MU-(OXOMETHYLIDENE)DIIRON(2+)'>402</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin_hydrogenase Ferredoxin hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.7.2 1.12.7.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nac FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nac OCA], [https://pdbe.org/6nac PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nac RCSB], [https://www.ebi.ac.uk/pdbsum/6nac PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nac ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nac FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nac OCA], [http://pdbe.org/6nac PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nac RCSB], [http://www.ebi.ac.uk/pdbsum/6nac PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nac ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PHF1_CLOPA PHF1_CLOPA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Hydrogenases display a wide range of catalytic rates and biases in reversible hydrogen gas oxidation catalysis. The interac-tions of the iron-sulfur containing catalytic site with the local protein environment are thought to contribute to differences in catalytic reactivity, but this has not been demonstrated. The microbe Clostridium pasteurianum produces three [FeFe]-hydrogenases that differ in "catalytic bias" by exerting a disproportionate rate acceleration in one direction or the other that spans a remarkable six orders of magnitude. The combination of high-resolution structural work, biochemical analyses, and computational modeling indicate that protein secondary interactions directly influence the relative stabiliza-tion/destabilization of different oxidation states of the active site metal cluster. This selective stabilization or destabilization of oxidation states can preferentially promote hydrogen oxidation or proton reduction and represents a simple yet elegant model by which a protein catalytic site can confer catalytic bias.
 +
 +
Tuning catalytic bias of hydrogen gas producing hydrogenases.,Artz JH, Zadvornyy OA, Mulder DW, Keable SM, Cohen AE, Ratzloff MW, Williams SG, Ginovska B, Kumar N, Song J, McPhillips SE, Davidson C, Lyubimov AY, Pence N, Schut GJ, Jones AK, Soltis SM, Adams M, Raugei S, King PW, Peters JW J Am Chem Soc. 2019 Dec 9. doi: 10.1021/jacs.9b08756. PMID:31816235<ref>PMID:31816235</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6nac" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ferredoxin hydrogenase]]
 
-
[[Category: Large Structures]]
 
-
[[Category: Cohen, A E]]
 
-
[[Category: Davidson, C M]]
 
-
[[Category: Keable, S M]]
 
-
[[Category: Lyubimov, A Y]]
 
-
[[Category: McPhillips, S E]]
 
-
[[Category: Peters, J W]]
 
-
[[Category: Soltis, S M]]
 
-
[[Category: Song, J]]
 
-
[[Category: Zadvornyy, O A]]
 
-
[[Category: Catalysis]]
 
[[Category: Clostridium pasteurianum]]
[[Category: Clostridium pasteurianum]]
-
[[Category: Electron-transfer]]
+
[[Category: Large Structures]]
-
[[Category: Iron sulfur cluster]]
+
[[Category: Cohen AE]]
-
[[Category: Oxidoreductase]]
+
[[Category: Davidson CM]]
 +
[[Category: Keable SM]]
 +
[[Category: Lyubimov AY]]
 +
[[Category: McPhillips SE]]
 +
[[Category: Peters JW]]
 +
[[Category: Soltis SM]]
 +
[[Category: Song J]]
 +
[[Category: Zadvornyy OA]]

Current revision

Crystal structure of [FeFe]-hydrogenase I (CpI) solved with single pulse free electron laser data

PDB ID 6nac

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools