|
|
| (One intermediate revision not shown.) |
| Line 3: |
Line 3: |
| | <StructureSection load='4oxi' size='340' side='right'caption='[[4oxi]], [[Resolution|resolution]] 2.26Å' scene=''> | | <StructureSection load='4oxi' size='340' side='right'caption='[[4oxi]], [[Resolution|resolution]] 2.26Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4oxi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OXI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OXI FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4oxi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OXI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OXI FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAP:GLYCYL-ADENOSINE-5-PHOSPHATE'>GAP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.261Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VC_1579 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAP:GLYCYL-ADENOSINE-5-PHOSPHATE'>GAP</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4oxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oxi OCA], [http://pdbe.org/4oxi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4oxi RCSB], [http://www.ebi.ac.uk/pdbsum/4oxi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4oxi ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4oxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oxi OCA], [https://pdbe.org/4oxi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4oxi RCSB], [https://www.ebi.ac.uk/pdbsum/4oxi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4oxi ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9KRQ7_VIBCH Q9KRQ7_VIBCH] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 22: |
Line 24: |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Vibch]] | + | [[Category: Vibrio cholerae O1 biovar El Tor str. N16961]] |
| - | [[Category: Fage, C D]] | + | [[Category: Fage CD]] |
| - | [[Category: Henderson, J C]] | + | [[Category: Henderson JC]] |
| - | [[Category: Keatinge-Clay, A T]] | + | [[Category: Keatinge-Clay AT]] |
| - | [[Category: Trent, M S]] | + | [[Category: Trent MS]] |
| - | [[Category: Adenylation domain]]
| + | |
| - | [[Category: Atp]]
| + | |
| - | [[Category: Glycine]]
| + | |
| - | [[Category: Glycyl-adenosine-5'-phosphate]]
| + | |
| - | [[Category: Ligase]]
| + | |
| Structural highlights
Function
Q9KRQ7_VIBCH
Publication Abstract from PubMed
The current pandemic El Tor biotype of O1 Vibrio cholerae is resistant to polymyxins, whereas the previous pandemic strain of the classical biotype is polymyxin sensitive. The almEFG operon found in El Tor V. cholerae confers >100-fold resistance to polymyxins through the glycylation of lipopolysaccharide. Here, we present the mechanistic determination of initial steps in the AlmEFG pathway. We verify that AlmF is an aminoacyl carrier protein and identify AlmE as the enzyme required to activate AlmF as a functional carrier protein. A combination of structural information and activity assays was used to identify a pair of active site residues that are important for mediating AlmE glycine specificity. Overall, the structure of AlmE in complex with its glycyl-adenylate intermediate reveals that AlmE is related to Gram-positive d-alanine/d-alanyl carrier protein ligase, while the trio of proteins in the AlmEFG system forms a chemical pathway that resembles the division of labor in nonribosomal peptide synthetases.
Antimicrobial peptide resistance of Vibrio cholerae results from an LPS modification pathway related to nonribosomal peptide synthetases.,Henderson JC, Fage CD, Cannon JR, Brodbelt JS, Keatinge-Clay AT, Trent MS ACS Chem Biol. 2014 Oct 17;9(10):2382-92. doi: 10.1021/cb500438x. Epub 2014 Aug, 18. PMID:25068415[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Henderson JC, Fage CD, Cannon JR, Brodbelt JS, Keatinge-Clay AT, Trent MS. Antimicrobial peptide resistance of Vibrio cholerae results from an LPS modification pathway related to nonribosomal peptide synthetases. ACS Chem Biol. 2014 Oct 17;9(10):2382-92. doi: 10.1021/cb500438x. Epub 2014 Aug, 18. PMID:25068415 doi:http://dx.doi.org/10.1021/cb500438x
|
