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| | <StructureSection load='4w6q' size='340' side='right'caption='[[4w6q]], [[Resolution|resolution]] 2.70Å' scene=''> | | <StructureSection load='4w6q' size='340' side='right'caption='[[4w6q]], [[Resolution|resolution]] 2.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4w6q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Stra6 Stra6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4W6Q FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4w6q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae_COH1 Streptococcus agalactiae COH1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4W6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4W6Q FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SER:SERINE'>SER</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SAN_1476 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342616 STRA6])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SER:SERINE'>SER</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4w6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w6q OCA], [http://pdbe.org/4w6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4w6q RCSB], [http://www.ebi.ac.uk/pdbsum/4w6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4w6q ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4w6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4w6q OCA], [https://pdbe.org/4w6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4w6q RCSB], [https://www.ebi.ac.uk/pdbsum/4w6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4w6q ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/GTF3_STRA6 GTF3_STRA6] Required for polymorphic O-glycosylation of the serine-rich repeat protein Srr2. Catalyzes the second step in glycosylation of the serine-rich repeat protein in this bacteria. Transfers glucose from UDP-glucose to the terminal GlcNAc moiety of 3-O-(N-acetyl-alpha-D-glucosaminyl)-L-seryl-[protein] which results from the first glycosylation step of Srr2; does not use other sugar nucleotides as substrates (PubMed:25404702, PubMed:21653318). Complements deletion of the gtf3 gene from S.parasanguinis strain FW213 (PubMed:21653318).<ref>PMID:21653318</ref> <ref>PMID:25404702</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Stra6]] | + | [[Category: Streptococcus agalactiae COH1]] |
| - | [[Category: Wu, H]] | + | [[Category: Wu H]] |
| - | [[Category: Zhang, H]] | + | [[Category: Zhang H]] |
| - | [[Category: Zhu, F]] | + | [[Category: Zhu F]] |
| - | [[Category: Glycosyltransferase]]
| + | |
| - | [[Category: Streptococcus agalactiae]]
| + | |
| - | [[Category: Transferase]]
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| Structural highlights
Function
GTF3_STRA6 Required for polymorphic O-glycosylation of the serine-rich repeat protein Srr2. Catalyzes the second step in glycosylation of the serine-rich repeat protein in this bacteria. Transfers glucose from UDP-glucose to the terminal GlcNAc moiety of 3-O-(N-acetyl-alpha-D-glucosaminyl)-L-seryl-[protein] which results from the first glycosylation step of Srr2; does not use other sugar nucleotides as substrates (PubMed:25404702, PubMed:21653318). Complements deletion of the gtf3 gene from S.parasanguinis strain FW213 (PubMed:21653318).[1] [2]
Publication Abstract from PubMed
Serine-rich repeat glycoproteins (SRRPs) are highly conserved in streptococci and staphylococci. Glycosylation of SRRPs is important for bacterial adhesion and pathogenesis. Streptococcus agalactiae is the leading cause of bacterial sepsis and meningitis among newborns. Srr2, an SRRP from S. agalactiae strain COH1, has been implicated in bacterial virulence. Four genes (gtfA, gtfB, gtfC, and gtfD) located downstream of srr2 share significant homology with genes involved in glycosylation of other SRRPs. We have shown previously that gtfA and gtfB encode two glycosyltransferases, GtfA and GtfB, that catalyze the transfer of GlcNAc residues to the Srr2 polypeptide. However, the function of other glycosyltransferases in glycosylation of Srr2 is unknown. In this study, we determined that GtfC catalyzed the direct transfer of glucosyl residues to Srr2-GlcNAc. The GtfC crystal structure was solved at 2.7 A by molecular replacement. Structural analysis revealed a loop region at the N terminus as a putative acceptor substrate binding domain. Deletion of this domain rendered GtfC unable to bind to its substrate Srr2-GlcNAc, concurrently abolished the glycosyltransferase activity of GtfC, and also altered glycosylation of Srr2. Furthermore, deletion of the corresponding regions from GtfC homologs also abolished their substrate binding and enzymatic activity, indicating that this region is functionally conserved. In summary, we have determined that GtfC is important for the glycosylation of Srr2 and identified a conserved loop region that is crucial for acceptor substrate binding from GtfC homologs in streptococci. These findings shed new mechanistic insight into this family of glycosyltransferases.
A conserved domain is crucial for acceptor substrate binding in a family of glucosyltransferases.,Zhu F, Zhang H, Wu H J Bacteriol. 2015 Feb;197(3):510-7. doi: 10.1128/JB.02267-14. Epub 2014 Nov 17. PMID:25404702[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhu F, Erlandsen H, Ding L, Li J, Huang Y, Zhou M, Liang X, Ma J, Wu H. Structural and functional analysis of a new subfamily of glycosyltransferases required for glycosylation of serine-rich streptococcal adhesins. J Biol Chem. 2011 Jun 7. PMID:21653318 doi:10.1074/jbc.M110.208629
- ↑ Zhu F, Zhang H, Wu H. A conserved domain is crucial for acceptor substrate binding in a family of glucosyltransferases. J Bacteriol. 2015 Feb;197(3):510-7. doi: 10.1128/JB.02267-14. Epub 2014 Nov 17. PMID:25404702 doi:http://dx.doi.org/10.1128/JB.02267-14
- ↑ Zhu F, Zhang H, Wu H. A conserved domain is crucial for acceptor substrate binding in a family of glucosyltransferases. J Bacteriol. 2015 Feb;197(3):510-7. doi: 10.1128/JB.02267-14. Epub 2014 Nov 17. PMID:25404702 doi:http://dx.doi.org/10.1128/JB.02267-14
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