5w9l
From Proteopedia
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| ==MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4== | ==MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4== | ||
| - | < | + | <SX load='5w9l' size='340' side='right' viewer='molstar' caption='[[5w9l]], [[Resolution|resolution]] 4.80Å' scene=''> | 
| == Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5w9l]] is a 10 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5w9l]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W9L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5W9L FirstGlance]. <br> | 
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.8Å</td></tr> | 
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5w9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w9l OCA], [https://pdbe.org/5w9l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5w9l RCSB], [https://www.ebi.ac.uk/pdbsum/5w9l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5w9l ProSAT]</span></td></tr> | ||
| </table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SPIKE_MERS1 SPIKE_MERS1] Attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Interacts with host DPP4 to mediate virla entry.[HAMAP-Rule:MF_04099]<ref>PMID:23486063</ref>   Mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099]  Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099] | ||
| <div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| == Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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| </div> | </div> | ||
| <div class="pdbe-citations 5w9l" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5w9l" style="background-color:#fffaf0;"></div> | ||
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| + | ==See Also== | ||
| + | *[[Sandbox 3001|Sandbox 3001]] | ||
| + | *[[Spike protein 3D structures|Spike protein 3D structures]] | ||
| == References == | == References == | ||
| <references/> | <references/> | ||
| __TOC__ | __TOC__ | ||
| - | </ | + | </SX> | 
| [[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category:  | + | [[Category: Middle East respiratory syndrome-related coronavirus]] | 
| - | [[Category:  | + | [[Category: Mus musculus]] | 
| - | [[Category: Pallesen | + | [[Category: Pallesen J]] | 
| - | [[Category: Ward | + | [[Category: Ward AB]] | 
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Current revision
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
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