1sgl
From Proteopedia
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<StructureSection load='1sgl' size='340' side='right'caption='[[1sgl]], [[Resolution|resolution]] 2.20Å' scene=''> | <StructureSection load='1sgl' size='340' side='right'caption='[[1sgl]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1sgl]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1sgl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichosanthes_lepiniana Trichosanthes lepiniana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SGL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SGL FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sgl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sgl OCA], [https://pdbe.org/1sgl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sgl RCSB], [https://www.ebi.ac.uk/pdbsum/1sgl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sgl ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/E0CX00_TRILE E0CX00_TRILE] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sgl ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sgl ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Trichomaglin is a protein isolated from root tuber of the plant Maganlin (Trichosanthes Lepiniate, Cucurbitaceae). The crystal structure of trichomaglin has been determined by multiple-isomorphous replacement and refined at 2.2 A resolution. The X-ray sequence was established, based on electron density combined with the experimentally determined N-terminal sequence, and the sequence information derived from mass spectroscopic analysis. X-ray sequence-based homolog search and the three-dimensional structure reveal that trichomaglin is a novel S-like RNase, which was confirmed by biological assay. Trichomaglin molecule contains an additional beta sheet in the HV(b) region, compared with the known plant RNase structures. Fourteen cystein residues form seven disulfide bridges, more than those in the other known structures of S- and S-like RNases. His43 and His105 are expected to be the catalytic acid and base, respectively. Four hydrosulfate ions are bound in the active site pocket, three of them mimicking the substrate binding sites. | ||
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- | The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease.,Gan JH, Yu L, Wu J, Xu H, Choudhary JS, Blackstock WP, Liu WY, Xia ZX Structure. 2004 Jun;12(6):1015-25. PMID:15274921<ref>PMID:15274921</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1sgl" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Trichosanthes lepiniana]] | [[Category: Trichosanthes lepiniana]] | ||
- | [[Category: Blackstock | + | [[Category: Blackstock WP]] |
- | [[Category: Choudhary | + | [[Category: Choudhary JS]] |
- | [[Category: Gan | + | [[Category: Gan J-H]] |
- | [[Category: Liu | + | [[Category: Liu W-Y]] |
- | [[Category: Wu | + | [[Category: Wu J]] |
- | [[Category: Xia | + | [[Category: Xia Z-X]] |
- | [[Category: Xu | + | [[Category: Xu H]] |
- | [[Category: Yu | + | [[Category: Yu L]] |
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Current revision
The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease
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Categories: Large Structures | Trichosanthes lepiniana | Blackstock WP | Choudhary JS | Gan J-H | Liu W-Y | Wu J | Xia Z-X | Xu H | Yu L