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| | <StructureSection load='2bvt' size='340' side='right'caption='[[2bvt]], [[Resolution|resolution]] 2.90Å' scene=''> | | <StructureSection load='2bvt' size='340' side='right'caption='[[2bvt]], [[Resolution|resolution]] 2.90Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2bvt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_fimi"_mcbeth_and_scales_1913 "bacterium fimi" mcbeth and scales 1913]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BVT FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2bvt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellulomonas_fimi Cellulomonas fimi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BVT FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2bvy|2bvy]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannan_endo-1,4-beta-mannosidase Mannan endo-1,4-beta-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.78 3.2.1.78] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bvt OCA], [https://pdbe.org/2bvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bvt RCSB], [https://www.ebi.ac.uk/pdbsum/2bvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bvt ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bvt OCA], [http://pdbe.org/2bvt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bvt RCSB], [http://www.ebi.ac.uk/pdbsum/2bvt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bvt ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9XCV5_CELFI Q9XCV5_CELFI] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacterium fimi mcbeth and scales 1913]] | |
| - | [[Category: Large Structures]] | |
| - | [[Category: Mannan endo-1,4-beta-mannosidase]] | |
| - | [[Category: Anderson, L]] | |
| - | [[Category: Leggio, L Lo]] | |
| - | [[Category: Nours, J Le]] | |
| - | [[Category: Stalbrand, H]] | |
| - | [[Category: Stoll, D]] | |
| - | [[Category: 4-mannanase]] | |
| - | [[Category: Beta-1]] | |
| | [[Category: Cellulomonas fimi]] | | [[Category: Cellulomonas fimi]] |
| - | [[Category: Clan gh-a]] | + | [[Category: Large Structures]] |
| - | [[Category: Family 26]] | + | [[Category: Anderson L]] |
| - | [[Category: Glycoside hydrolase]] | + | [[Category: Le Nours J]] |
| - | [[Category: Hydrolase]] | + | [[Category: Lo Leggio L]] |
| | + | [[Category: Stalbrand H]] |
| | + | [[Category: Stoll D]] |
| Structural highlights
Function
Q9XCV5_CELFI
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The endo-beta-1,4-mannanase from the soil bacterium Cellulomonas fimi is a modular plant cell wall degrading enzyme involved in the hydrolysis of the backbone of mannan, one of the most abundant polysaccharides of the hemicellulosic network in the plant cell wall. The crystal structure of a recombinant truncated endo-beta-1,4-mannanase from C. fimi (CfMan26A-50K) was determined by X-ray crystallography to 2.25 A resolution using the molecular replacement technique. The overall structure of the enzyme consists of a core (beta/alpha)8-barrel catalytic module characteristic of clan GH-A, connected via a linker to an immunoglobulin-like module of unknown function. A complex with the oligosaccharide mannotriose to 2.9 A resolution has also been obtained. Both the native structure and the complex show a cacodylate ion bound at the -1 subsite, while subsites -2, -3, and -4 are occupied by mannotriose in the complex. Enzyme kinetic analysis and the analysis of hydrolysis products from manno-oligosaccharides and mannopentitol suggest five important active-site cleft subsites. CfMan26A-50K has a high affinity -3 subsite with Phe325 as an aromatic platform, which explains the mannose releasing property of the enzyme. Structural differences with the homologous Cellvibrio japonicus beta-1,4-mannanase (CjMan26A) at the -2 and -3 subsites may explain the poor performance of CfMan26A mutants as "glycosynthases".
The structure and characterization of a modular endo-beta-1,4-mannanase from Cellulomonas fimi.,Le Nours J, Anderson L, Stoll D, Stalbrand H, Lo Leggio L Biochemistry. 2005 Sep 27;44(38):12700-8. PMID:16171384[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Le Nours J, Anderson L, Stoll D, Stalbrand H, Lo Leggio L. The structure and characterization of a modular endo-beta-1,4-mannanase from Cellulomonas fimi. Biochemistry. 2005 Sep 27;44(38):12700-8. PMID:16171384 doi:10.1021/bi050779v
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