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| <StructureSection load='2c4i' size='340' side='right'caption='[[2c4i]], [[Resolution|resolution]] 1.95Å' scene=''> | | <StructureSection load='2c4i' size='340' side='right'caption='[[2c4i]], [[Resolution|resolution]] 1.95Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2c4i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C4I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2C4I FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2c4i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C4I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C4I FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTN:BIOTIN'>BTN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1avd|1avd]], [[1ave|1ave]], [[1ij8|1ij8]], [[1ldo|1ldo]], [[1ldq|1ldq]], [[1lel|1lel]], [[1nqn|1nqn]], [[1rav|1rav]], [[1vyo|1vyo]], [[2avi|2avi]], [[2cam|2cam]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTN:BIOTIN'>BTN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2c4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c4i OCA], [http://pdbe.org/2c4i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2c4i RCSB], [http://www.ebi.ac.uk/pdbsum/2c4i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2c4i ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c4i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c4i OCA], [https://pdbe.org/2c4i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c4i RCSB], [https://www.ebi.ac.uk/pdbsum/2c4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c4i ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/AVID_CHICK AVID_CHICK] The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin). |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Chick]] | + | [[Category: Gallus gallus]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Airenne, T T]] | + | [[Category: Airenne TT]] |
- | [[Category: Helttunen, K]] | + | [[Category: Helttunen K]] |
- | [[Category: Horha, J]] | + | [[Category: Horha J]] |
- | [[Category: Hytonen, V P]] | + | [[Category: Hytonen VP]] |
- | [[Category: Johnson, M S]] | + | [[Category: Johnson MS]] |
- | [[Category: Kulomaa, M S]] | + | [[Category: Kulomaa MS]] |
- | [[Category: Niskanen, E A]] | + | [[Category: Niskanen EA]] |
- | [[Category: Nordlund, H R]] | + | [[Category: Nordlund HR]] |
- | [[Category: Salminen, T A]] | + | [[Category: Salminen TA]] |
- | [[Category: Biotin]]
| + | |
- | [[Category: Glycoprotein]]
| + | |
- | [[Category: Signalor]]
| + | |
| Structural highlights
Function
AVID_CHICK The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin).
Publication Abstract from PubMed
Dual chain avidin (dcAvd) is an engineered avidin form, in which two circularly permuted chicken avidin monomers are fused into one polypeptide chain. DcAvd can theoretically form two different pseudotetrameric quaternary assemblies because of symmetry at the monomer-monomer interfaces. Here, our aim was to control the assembly of the quaternary structure of dcAvd. We introduced the mutation I117C into one of the circularly permuted domains of dcAvd and scanned residues along the 1-3 subunit interface of the other domain. Interestingly, V115H resulted in a single, disulfide locked quaternary assembly of dcAvd, whereas I117H could not guide the oligomerisation process even though it stabilised the protein. The modified dcAvd forms were found to retain their characteristic pseudotetrameric state both at high and low pH, and were shown to bind D-biotin at levels comparable to that of wild-type chicken avidin. The crystal structure of dcAvd-biotin complex at 1.95 Angstroms resolution demonstrates the formation of the functional dcAvd pseudotetramer at the atomic level and reveals the molecular basis for its special properties. Altogether, our data facilitate further engineering of the biotechnologically valuable dcAvd scaffold and gives insights into how to guide the quaternary structure assembly of oligomeric proteins.
Controlling quaternary structure assembly: subunit interface engineering and crystal structure of dual chain avidin.,Hytonen VP, Horha J, Airenne TT, Niskanen EA, Helttunen KJ, Johnson MS, Salminen TA, Kulomaa MS, Nordlund HR J Mol Biol. 2006 Jun 23;359(5):1352-63. Epub 2006 May 6. PMID:16787776[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hytonen VP, Horha J, Airenne TT, Niskanen EA, Helttunen KJ, Johnson MS, Salminen TA, Kulomaa MS, Nordlund HR. Controlling quaternary structure assembly: subunit interface engineering and crystal structure of dual chain avidin. J Mol Biol. 2006 Jun 23;359(5):1352-63. Epub 2006 May 6. PMID:16787776 doi:S0022-2836(06)00518-3
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