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| <StructureSection load='3x3y' size='340' side='right'caption='[[3x3y]], [[Resolution|resolution]] 1.50Å' scene=''> | | <StructureSection load='3x3y' size='340' side='right'caption='[[3x3y]], [[Resolution|resolution]] 1.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3x3y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X3Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3X3Y FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3x3y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X3Y FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.499Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TYQ:3-AMINO-6-HYDROXY-TYROSINE'>TYQ</scene></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TYQ:3-AMINO-6-HYDROXY-TYROSINE'>TYQ</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3x3x|3x3x]], [[3x3z|3x3z]], [[3x40|3x40]], [[3x41|3x41]], [[3x42|3x42]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x3y OCA], [https://pdbe.org/3x3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x3y RCSB], [https://www.ebi.ac.uk/pdbsum/3x3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x3y ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3x3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x3y OCA], [http://pdbe.org/3x3y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3x3y RCSB], [http://www.ebi.ac.uk/pdbsum/3x3y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3x3y ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 3x3y" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 3x3y" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Copper amine oxidase 3D structures|Copper amine oxidase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Arthrobacter globiformis]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Primary-amine oxidase]]
| + | [[Category: Hamaguchi A]] |
- | [[Category: Hamaguchi, A]] | + | [[Category: Hayashi H]] |
- | [[Category: Hayashi, H]] | + | [[Category: Kataoka M]] |
- | [[Category: Kataoka, M]] | + | [[Category: Kawano Y]] |
- | [[Category: Kawano, Y]] | + | [[Category: Murakawa T]] |
- | [[Category: Murakawa, T]] | + | [[Category: Nakai T]] |
- | [[Category: Nakai, T]] | + | [[Category: Nakanishi S]] |
- | [[Category: Nakanishi, S]] | + | [[Category: Okajima T]] |
- | [[Category: Okajima, T]] | + | [[Category: Tanizawa K]] |
- | [[Category: Tanizawa, K]] | + | [[Category: Yamaguchi H]] |
- | [[Category: Yamaguchi, H]] | + | |
- | [[Category: Copper amine oxidase]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Topaquinone]]
| + | |
- | [[Category: Tpq]]
| + | |
| Structural highlights
3x3y is a 2 chain structure with sequence from Arthrobacter globiformis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 1.499Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
PAOX_ARTGO
Publication Abstract from PubMed
The catalytic reaction of copper amine oxidase proceeds through a ping-pong mechanism comprising two half-reactions. In the initial half-reaction, the substrate amine reduces the Tyr-derived cofactor, topa quinone (TPQ), to an aminoresorcinol form (TPQamr) that is in equilibrium with a semiquinone radical (TPQsq) via an intramolecular electron transfer to the active-site copper. We have analyzed this reductive half-reaction in crystals of the copper amine oxidase from Arthrobacter globiformis. Anerobic soaking of the crystals with an amine substrate shifted the equilibrium toward TPQsq in an "on-copper" conformation, in which the 4-OH group ligated axially to the copper center, which was probably reduced to Cu(I). When the crystals were soaked with substrate in the presence of halide ions, which act as uncompetitive and noncompetitive inhibitors with respect to the amine substrate and dioxygen, respectively, the equilibrium in the crystals shifted toward the "off-copper" conformation of TPQamr. The halide ion was bound to the axial position of the copper center, thereby preventing TPQamr from adopting the on-copper conformation. Furthermore, transient kinetic analyses in the presence of viscogen (glycerol) revealed that only the rate constant in the step of TPQamr/TPQsq interconversion is markedly affected by the viscogen, which probably perturbs the conformational change. These findings unequivocally demonstrate that TPQ undergoes large conformational changes during the reductive half-reaction.
Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.,Murakawa T, Hamaguchi A, Nakanishi S, Kataoka M, Nakai T, Kawano Y, Yamaguchi H, Hayashi H, Tanizawa K, Okajima T J Biol Chem. 2015 Sep 18;290(38):23094-109. doi: 10.1074/jbc.M115.662726. Epub, 2015 Aug 11. PMID:26269595[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Murakawa T, Hamaguchi A, Nakanishi S, Kataoka M, Nakai T, Kawano Y, Yamaguchi H, Hayashi H, Tanizawa K, Okajima T. Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J Biol Chem. 2015 Sep 18;290(38):23094-109. doi: 10.1074/jbc.M115.662726. Epub, 2015 Aug 11. PMID:26269595 doi:http://dx.doi.org/10.1074/jbc.M115.662726
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