4hap

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:06, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='4hap' size='340' side='right'caption='[[4hap]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='4hap' size='340' side='right'caption='[[4hap]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4hap]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Limnoria_quadripunctata Limnoria quadripunctata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HAP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HAP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4hap]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Limnoria_quadripunctata Limnoria quadripunctata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HAP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4gwa|4gwa]], [[4haq|4haq]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hap OCA], [https://pdbe.org/4hap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hap RCSB], [https://www.ebi.ac.uk/pdbsum/4hap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hap ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GH7B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=161573 Limnoria quadripunctata])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulose_1,4-beta-cellobiosidase_(non-reducing_end) Cellulose 1,4-beta-cellobiosidase (non-reducing end)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.91 3.2.1.91] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hap OCA], [http://pdbe.org/4hap PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4hap RCSB], [http://www.ebi.ac.uk/pdbsum/4hap PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4hap ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GH7B_LIMQU GH7B_LIMQU] Exocellobiohydrolase (CBH) that catalyzes the hydrolysis of 1,4-beta-D-glucosidic bonds in cellulose to release the disaccharide cellobiose (PubMed:23733951). The degradation of cellulose involves an interplay between different cellulolytic enzymes. Hydrolysis starts with endoglucanases (EGs), which cut internal beta-1,4-glucosidic bonds in cellulose to reduce the polymerization degree of the substrate and create new chain ends for exocellobiohydrolases (CBHs). The CBHs release the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain. Finally, beta-1,4-glucosidases hydrolyze the cellobiose and other short cello-oligosaccharides into glucose units (Probable).<ref>PMID:23733951</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 25:
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Limnoria quadripunctata]]
[[Category: Limnoria quadripunctata]]
-
[[Category: Bruce, N C]]
+
[[Category: Bruce NC]]
-
[[Category: Cragg, S M]]
+
[[Category: Cragg SM]]
-
[[Category: Guille, M J]]
+
[[Category: Guille MJ]]
-
[[Category: Kern, M]]
+
[[Category: Kern M]]
-
[[Category: Martin, R N.A]]
+
[[Category: Martin RNA]]
-
[[Category: McGeehan, J E]]
+
[[Category: McGeehan JE]]
-
[[Category: McQueen-Mason, S J]]
+
[[Category: McQueen-Mason SJ]]
-
[[Category: Schnorr, K M]]
+
[[Category: Schnorr KM]]
-
[[Category: Streeter, S D]]
+
[[Category: Streeter SD]]
-
[[Category: Cellobiohydrolase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal Structure of a GH7 family cellobiohydrolase from Limnoria quadripunctata in complex with cellobiose

PDB ID 4hap

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools