|
|
(One intermediate revision not shown.) |
Line 3: |
Line 3: |
| <StructureSection load='5b1o' size='340' side='right'caption='[[5b1o]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='5b1o' size='340' side='right'caption='[[5b1o]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5b1o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B1O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B1O FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5b1o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B1O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B1O FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5b1n|5b1n]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">envZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b1o OCA], [https://pdbe.org/5b1o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b1o RCSB], [https://www.ebi.ac.uk/pdbsum/5b1o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b1o ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b1o OCA], [http://pdbe.org/5b1o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b1o RCSB], [http://www.ebi.ac.uk/pdbsum/5b1o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b1o ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/ENVZ_ECOLI ENVZ_ECOLI] Member of the two-component regulatory system EnvZ/OmpR involved in the regulation of osmoregulation (genes ompF and ompC). EnvZ functions as a membrane-associated protein kinase that phosphorylates OmpR in response to environmental signals. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 21: |
Line 22: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus coli migula 1895]] | + | [[Category: Escherichia coli]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Eguchi, Y]] | + | [[Category: Eguchi Y]] |
- | [[Category: Fukamizo, T]] | + | [[Category: Fukamizo T]] |
- | [[Category: Igarashi, M]] | + | [[Category: Igarashi M]] |
- | [[Category: Inukai, Y]] | + | [[Category: Inukai Y]] |
- | [[Category: Kigawa, T]] | + | [[Category: Kigawa T]] |
- | [[Category: Okajima, T]] | + | [[Category: Okajima T]] |
- | [[Category: Shimizu, R]] | + | [[Category: Shimizu R]] |
- | [[Category: Shinya, S]] | + | [[Category: Shinya S]] |
- | [[Category: Tochio, N]] | + | [[Category: Tochio N]] |
- | [[Category: Ueda, S]] | + | [[Category: Ueda S]] |
- | [[Category: Utsumi, R]] | + | [[Category: Utsumi R]] |
- | [[Category: Autophosphorylation]]
| + | |
- | [[Category: Dhp domain]]
| + | |
- | [[Category: Histidine kinase]]
| + | |
- | [[Category: Signaling protein]]
| + | |
- | [[Category: Two-component system]]
| + | |
| Structural highlights
Function
ENVZ_ECOLI Member of the two-component regulatory system EnvZ/OmpR involved in the regulation of osmoregulation (genes ompF and ompC). EnvZ functions as a membrane-associated protein kinase that phosphorylates OmpR in response to environmental signals.
Publication Abstract from PubMed
Two-component signal transduction systems (TCSs), composed of a histidine kinase sensor (HK) and its cognate response regulator, sense and respond to environmental changes and are related to the virulence of pathogens. TCSs are potential targets for alternative antibiotics and anti-virulence agents. Here we found that waldiomycin, an angucycline antibiotic that inhibits a growth essential HK, WalK, in Gram-positive bacteria, also inhibits several class I HKs from the Gram-negative Escherichia coli. NMR analyses and site-directed mutagenesis studies using the osmo-sensing EnvZ, a prototypical HK of E. coli, showed that waldiomycin directly binds to both H-box and X-region, which are the two conserved regions in the dimerization-inducing and histidine-containing phosphotransfer (DHp) domain of HKs. Waldiomycin inhibits phosphorylation of the conserved histidine in the H-box. Analysis of waldiomycin derivatives suggests that the angucyclic ring, situated near the H-box in the waldiomycin-EnvZ DHp domain complex model, is responsible for the inhibitory activity. We demonstrate that waldiomycin is an HK inhibitor binding to the H-box region and has the potential of inhibiting a broad spectrum of HKs.
Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases.,Eguchi Y, Okajima T, Tochio N, Inukai Y, Shimizu R, Ueda S, Shinya S, Kigawa T, Fukamizo T, Igarashi M, Utsumi R J Antibiot (Tokyo). 2017 Mar;70(3):251-258. doi: 10.1038/ja.2016.151. Epub 2016, Dec 21. PMID:27999439[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Eguchi Y, Okajima T, Tochio N, Inukai Y, Shimizu R, Ueda S, Shinya S, Kigawa T, Fukamizo T, Igarashi M, Utsumi R. Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases. J Antibiot (Tokyo). 2017 Mar;70(3):251-258. doi: 10.1038/ja.2016.151. Epub 2016, Dec 21. PMID:27999439 doi:http://dx.doi.org/10.1038/ja.2016.151
|