|
|
(One intermediate revision not shown.) |
Line 3: |
Line 3: |
| <StructureSection load='6uak' size='340' side='right'caption='[[6uak]], [[Resolution|resolution]] 2.01Å' scene=''> | | <StructureSection load='6uak' size='340' side='right'caption='[[6uak]], [[Resolution|resolution]] 2.01Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6uak]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lachnospiraceae_bacterium_c6a11 Lachnospiraceae bacterium c6a11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UAK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UAK FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6uak]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachnospiraceae_bacterium_C6A11 Lachnospiraceae bacterium C6A11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UAK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UAK FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DEO87_04690 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1410622 Lachnospiraceae bacterium C6A11])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uak FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uak OCA], [http://pdbe.org/6uak PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uak RCSB], [http://www.ebi.ac.uk/pdbsum/6uak PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uak ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uak FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uak OCA], [https://pdbe.org/6uak PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uak RCSB], [https://www.ebi.ac.uk/pdbsum/6uak PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uak ProSAT]</span></td></tr> |
| </table> | | </table> |
- | <div style="background-color:#fffaf0;">
| + | == Function == |
- | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/A0A3D0LE54_9FIRM A0A3D0LE54_9FIRM] |
- | As a result of the exponential increase in genomic data, discovery of novel ribosomally synthesized and post-translationally modified peptide natural products (RiPPs) has progressed rapidly in the past decade. The lanthipeptides are a major subset of RiPPs. Through genome mining we identified a novel lanthipeptide biosynthetic gene cluster (lah) from Lachnospiraceae bacterium C6A11, an anaerobic bacterium that is a member of the human microbiota and which is implicated in the development of host disease states such as type 2 diabetes and resistance to Clostridium difficile colonization. The lah cluster encodes at least seven putative precursor peptides and multiple post-translational modification (PTM) enzymes. Two unusual class II lanthipeptide synthetases LahM1/M2 and a substrate-tolerant S-adenosyl-l-methionine (SAM)-dependent methyltransferase LahSB are biochemically characterized in this study. We also present the crystal structure of LahSB in complex with product S-adenosylhomocysteine. This study sets the stage for further exploration of the final products of the lah pathway as well as their potential physiological functions in human/animal gut microbiota.
| + | |
| | | |
- | Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae.,Huo L, Zhao X, Acedo JZ, Estrada P, Nair SK, van der Donk WA Chembiochem. 2019 Sep 18. doi: 10.1002/cbic.201900483. PMID:31532570<ref>PMID:31532570</ref>
| + | ==See Also== |
- | | + | *[[SAM-dependent methyltrasferase 3D structures|SAM-dependent methyltrasferase 3D structures]] |
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
| + | |
- | </div>
| + | |
- | <div class="pdbe-citations 6uak" style="background-color:#fffaf0;"></div>
| + | |
- | == References ==
| + | |
- | <references/>
| + | |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Lachnospiraceae bacterium c6a11]] | + | [[Category: Lachnospiraceae bacterium C6A11]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Estrada, P]] | + | [[Category: Estrada P]] |
- | [[Category: Nair, S K]] | + | [[Category: Nair SK]] |
- | [[Category: Methyltransferase]]
| + | |
- | [[Category: Ripp]]
| + | |
- | [[Category: Transferase]]
| + | |