1rpe

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(New page: 200px<br /> <applet load="1rpe" size="450" color="white" frame="true" align="right" spinBox="true" caption="1rpe, resolution 2.500&Aring;" /> '''THE PHAGE 434 OR2/...)
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[[Image:1rpe.gif|left|200px]]<br />
 
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<applet load="1rpe" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1rpe, resolution 2.500&Aring;" />
 
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'''THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION'''<br />
 
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==Overview==
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==THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION==
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The crystal structure of the DNA-binding domain of bacteriophage 434, repressor (R1-69) in complex with a 20 base-pair DNA fragment has been, determined to 2.5 A resolution. The DNA fragment contains the sequence of, the OR2 operator site, which differs from the previously studied OR1 site, at three of the variable six central base-pairs. Comparison of the two, structures shows that the overall bent conformation of the DNA backbone as, well as the pattern of DNA-protein interactions seen in the OR1/R1-69, complex are maintained in the OR2 complex. However, the conformations of, the DNA base-pairs are different in the two structures. In particular, the, central base-pairs of OR2/R1-69 structure are more co-planar than in, OR1/R1-69, and there are no cross-strand "bifurcated" hydrogen bonds., These results show that binding of the protein causes operator DNA to, adopt a particular, well-defined backbone conformation, and they reinforce, the notion that the energetic cost of achieving this conformation, most, likely different for different sequences, can determine, at least in part, the relative affinity of the repressor for different operator sites.
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<StructureSection load='1rpe' size='340' side='right'caption='[[1rpe]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1rpe]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Phage_434 Phage 434]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RPE FirstGlance]. <br>
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1RPE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteriophage_434 Bacteriophage 434]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1RPE OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rpe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rpe OCA], [https://pdbe.org/1rpe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rpe RCSB], [https://www.ebi.ac.uk/pdbsum/1rpe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rpe ProSAT]</span></td></tr>
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==Reference==
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</table>
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The phage 434 OR2/R1-69 complex at 2.5 A resolution., Shimon LJ, Harrison SC, J Mol Biol. 1993 Aug 5;232(3):826-38. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8355273 8355273]
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== Function ==
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[[Category: Bacteriophage 434]]
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[https://www.uniprot.org/uniprot/RPC1_BP434 RPC1_BP434] Binds to two sets of three contiguous operator sites in the phage genome.
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[[Category: Single protein]]
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== Evolutionary Conservation ==
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[[Category: Harrison, S.C.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Shimon, L.J.W.]]
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Check<jmol>
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[[Category: double helix]]
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<jmolCheckbox>
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[[Category: protein-dna complex]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rp/1rpe_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Thu Nov 8 12:43:22 2007''
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rpe ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Phage 434]]
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[[Category: Harrison SC]]
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[[Category: Shimon LJW]]

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THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION

PDB ID 1rpe

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