This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6nnz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:56, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6nnz' size='340' side='right'caption='[[6nnz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='6nnz' size='340' side='right'caption='[[6nnz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6nnz]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NNZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NNZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6nnz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NNZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NNZ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=KUD:[(1S,2R)-2-(benzenecarbonyl)cyclopentyl]acetic+acid'>KUD</scene>, <scene name='pdbligand=KUG:[(1R,2S)-2-(benzenecarbonyl)cyclopentyl]acetic+acid'>KUG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6cve|6cve]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KUD:[(1S,2R)-2-(benzenecarbonyl)cyclopentyl]acetic+acid'>KUD</scene>, <scene name='pdbligand=KUG:[(1R,2S)-2-(benzenecarbonyl)cyclopentyl]acetic+acid'>KUG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dethiobiotin_synthase Dethiobiotin synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.3 6.3.3.3] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nnz OCA], [https://pdbe.org/6nnz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nnz RCSB], [https://www.ebi.ac.uk/pdbsum/6nnz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nnz ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nnz OCA], [http://pdbe.org/6nnz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nnz RCSB], [http://www.ebi.ac.uk/pdbsum/6nnz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nnz ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BIOD_MYCTU BIOD_MYCTU]] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.<ref>PMID:20565114</ref>
+
[https://www.uniprot.org/uniprot/BIOD_MYCTU BIOD_MYCTU] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.<ref>PMID:20565114</ref>
 +
 
 +
==See Also==
 +
*[[Dethiobiotin synthetase 3D structures|Dethiobiotin synthetase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Dethiobiotin synthase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bruning, J B]]
+
[[Category: Mycobacterium tuberculosis H37Rv]]
-
[[Category: Polyak, S W]]
+
[[Category: Bruning JB]]
-
[[Category: Thompson, A P]]
+
[[Category: Polyak SW]]
-
[[Category: Wegener, K L]]
+
[[Category: Thompson AP]]
-
[[Category: Enzyme]]
+
[[Category: Wegener KL]]
-
[[Category: Nucleotide triphosphate binding]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 4

PDB ID 6nnz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools