This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wl8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 25 October 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1wl8' size='340' side='right'caption='[[1wl8]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='1wl8' size='340' side='right'caption='[[1wl8]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1wl8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WL8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WL8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1wl8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WL8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WL8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/GMP_synthase_(glutamine-hydrolyzing) GMP synthase (glutamine-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.5.2 6.3.5.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wl8 OCA], [https://pdbe.org/1wl8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wl8 RCSB], [https://www.ebi.ac.uk/pdbsum/1wl8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wl8 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wl8 TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wl8 OCA], [http://pdbe.org/1wl8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wl8 RCSB], [http://www.ebi.ac.uk/pdbsum/1wl8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wl8 ProSAT], [http://www.topsan.org/Proteins/RSGI/1wl8 TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GUAAA_PYRHO GUAAA_PYRHO]] Catalyzes the synthesis of GMP from XMP (By similarity).
+
[https://www.uniprot.org/uniprot/GUAAA_PYRHO GUAAA_PYRHO] Catalyzes the synthesis of GMP from XMP (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 26: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyrococcus shinkaii]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Kunishima, N]]
+
[[Category: Pyrococcus horikoshii]]
-
[[Category: Lokanath, N K]]
+
[[Category: Kunishima N]]
-
[[Category: Structural genomic]]
+
[[Category: Lokanath NK]]
-
[[Category: Gatase]]
+
-
[[Category: Ligase]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of PH1346 protein from Pyrococcus horikoshii

PDB ID 1wl8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools