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| | ==NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae== | | ==NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae== |
| - | <StructureSection load='1xax' size='340' side='right'caption='[[1xax]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='1xax' size='340' side='right'caption='[[1xax]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1xax]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_influenzae"_lehmann_and_neumann_1896 "bacterium influenzae" lehmann and neumann 1896]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XAX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XAX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1xax]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XAX FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xax OCA], [http://pdbe.org/1xax PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xax RCSB], [http://www.ebi.ac.uk/pdbsum/1xax PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xax ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xax OCA], [https://pdbe.org/1xax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xax RCSB], [https://www.ebi.ac.uk/pdbsum/1xax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xax ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/YBEY_HAEIN YBEY_HAEIN]] Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.[HAMAP-Rule:MF_00009] | + | [https://www.uniprot.org/uniprot/YBEY_HAEIN YBEY_HAEIN] Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.[HAMAP-Rule:MF_00009] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacterium influenzae lehmann and neumann 1896]] | |
| - | [[Category: Large Structures]] | |
| - | [[Category: Eisenstein, E]] | |
| - | [[Category: Liu, F]] | |
| - | [[Category: Orban, J]] | |
| - | [[Category: Parsons, J F]] | |
| - | [[Category: Parsons, L M]] | |
| - | [[Category: S2F, Structure 2.Function Project]] | |
| - | [[Category: Yeh, D C]] | |
| | [[Category: Haemophilus influenzae]] | | [[Category: Haemophilus influenzae]] |
| - | [[Category: Hydrolase]] | + | [[Category: Large Structures]] |
| - | [[Category: Mmp]] | + | [[Category: Eisenstein E]] |
| - | [[Category: PSI, Protein structure initiative]] | + | [[Category: Liu F]] |
| - | [[Category: S2f]] | + | [[Category: Orban J]] |
| - | [[Category: Structural genomic]] | + | [[Category: Parsons JF]] |
| - | [[Category: Structure 2 function project]] | + | [[Category: Parsons LM]] |
| - | [[Category: Unknown function]] | + | [[Category: Yeh DC]] |
| Structural highlights
Function
YBEY_HAEIN Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.[HAMAP-Rule:MF_00009]
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The solution structure of the 154-residue conserved hypothetical protein HI0004 has been determined using multidimensional heteronuclear NMR spectroscopy. HI0004 has sequence homologs in many organisms ranging from bacteria to humans and is believed to be essential in Haemophilus influenzae, although an exact function has yet to be defined. It has a alpha-beta-alpha sandwich architecture consisting of a central four-stranded beta-sheet with the alpha2-helix packed against one side of the beta-sheet and four alpha-helices (alpha1, alpha3, alpha4, alpha5) on the other side. There is structural homology with the eukaryotic matrix metalloproteases (MMPs), but little sequence similarity except for a conserved region containing three histidines that appears in both the MMPs and throughout the HI0004 family of proteins. The solution structure of HI0004 is compared with the X-ray structure of an Aquifex aeolicus homolog, AQ_1354, which has 36% sequence identity over 148 residues. Despite this level of sequence homology, significant differences exist between the two structures. These differences are described along with possible functional implications of the structures.
NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog.,Yeh DC, Parsons LM, Parsons JF, Liu F, Eisenstein E, Orban J Protein Sci. 2005 Feb;14(2):424-30. Epub 2005 Jan 4. PMID:15632286[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Yeh DC, Parsons LM, Parsons JF, Liu F, Eisenstein E, Orban J. NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog. Protein Sci. 2005 Feb;14(2):424-30. Epub 2005 Jan 4. PMID:15632286 doi:10.1110/ps.041096705
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