6vjv

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(New page: '''Unreleased structure''' The entry 6vjv is ON HOLD Authors: Olmos Jr., J.L., Campbell, I.J., Miller, M.D., Xu, W., Kahanda, D., Atkinson, J.T., Sparks, N., Bennett, G.N., Silberg, J.J...)
Current revision (08:14, 11 October 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6vjv is ON HOLD
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==Crystal structure of the Prochlorococcus phage (myovirus P-SSM2) ferredoxin at 1.6 Angstroms==
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<StructureSection load='6vjv' size='340' side='right'caption='[[6vjv]], [[Resolution|resolution]] 1.59&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6vjv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Prochlorococcus_phage_P-SSM2 Prochlorococcus phage P-SSM2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VJV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.59&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vjv OCA], [https://pdbe.org/6vjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vjv RCSB], [https://www.ebi.ac.uk/pdbsum/6vjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vjv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q58M74_BPPRM Q58M74_BPPRM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Marine cyanobacteria are infected by phages whose genomes encode ferredoxin (Fd) electron carriers. These Fds are thought to redirect the energy harvested from light to phage-encoded oxidoreductases that enhance viral fitness, but it is unclear how the biophysical properties and partner specificities of phage Fds relate to those in photosynthetic organisms. Here, results of a bioinformatics analysis using a sequence similarity network revealed that phage Fds are most closely related to cyanobacterial Fds that transfer electrons from photosystems to oxidoreductases involved in nutrient assimilation. Structural analysis of myovirus P-SSM2 Fd (pssm2-Fd), which infects the cyanobacterium Prochlorococcus marinus, revealed a high similarity to cyanobacterial Fds (&lt;/= 0.5 A root-mean-square deviation). Additionally, pssm2-Fd exhibited a low midpoint reduction potential (-336 mV versus standard hydrogen electrode) similar to other photosynthetic Fds, albeit had lower thermostability (Tm = 28 degrees C) than many other Fds. When expressed in an Escherichia coli strain deficient in sulfite assimilation, pssm2-Fd complemented bacterial growth when co-expressed with a P. marinus sulfite reductase, revealing that pssm2-Fd can transfer electrons to a host protein involved in nutrient assimilation. The high structural similarity with cyanobacterial Fds and reactivity with a host sulfite reductase suggest that phage Fds evolved to transfer electrons to cyanobacterial-encoded oxidoreductases.
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Authors: Olmos Jr., J.L., Campbell, I.J., Miller, M.D., Xu, W., Kahanda, D., Atkinson, J.T., Sparks, N., Bennett, G.N., Silberg, J.J., Phillips Jr., G.N.
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Prochlorococcus phage ferredoxin: Structural characterization and electron transfer to cyanobacterial sulfite reductases.,Campbell IJ, Olmos JL Jr, Xu W, Kahanda D, Atkinson JT, Sparks ON, Miller MD, Phillips GN Jr, Bennett GN, Silberg JJ J Biol Chem. 2020 May 19. pii: RA120.013501. doi: 10.1074/jbc.RA120.013501. PMID:32434930<ref>PMID:32434930</ref>
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Description: Crystal structure of the Prochlorococcus phage (myovirus P-SSM2) ferredoxin at 1.6 Angstroms
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Sparks, N]]
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<div class="pdbe-citations 6vjv" style="background-color:#fffaf0;"></div>
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[[Category: G.N]]
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[[Category: Olmos Jr]]
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==See Also==
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[[Category: Phillips Jr]]
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*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
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[[Category: Kahanda, D]]
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== References ==
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[[Category: Miller, M.D]]
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<references/>
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[[Category: J.L]]
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__TOC__
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[[Category: Atkinson, J.T]]
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</StructureSection>
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[[Category: Silberg, J.J]]
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[[Category: Large Structures]]
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[[Category: Bennett, G.N]]
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[[Category: Prochlorococcus phage P-SSM2]]
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[[Category: Campbell, I.J]]
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[[Category: Atkinson JT]]
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[[Category: Xu, W]]
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[[Category: Bennett GN]]
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[[Category: Campbell IJ]]
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[[Category: Kahanda D]]
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[[Category: Miller MD]]
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[[Category: Olmos Jr JL]]
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[[Category: Phillips Jr GN]]
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[[Category: Silberg JJ]]
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[[Category: Sparks N]]
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[[Category: Xu W]]

Current revision

Crystal structure of the Prochlorococcus phage (myovirus P-SSM2) ferredoxin at 1.6 Angstroms

PDB ID 6vjv

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