6vjv
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6vjv is ON HOLD Authors: Olmos Jr., J.L., Campbell, I.J., Miller, M.D., Xu, W., Kahanda, D., Atkinson, J.T., Sparks, N., Bennett, G.N., Silberg, J.J...) |
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of the Prochlorococcus phage (myovirus P-SSM2) ferredoxin at 1.6 Angstroms== | |
+ | <StructureSection load='6vjv' size='340' side='right'caption='[[6vjv]], [[Resolution|resolution]] 1.59Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6vjv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Prochlorococcus_phage_P-SSM2 Prochlorococcus phage P-SSM2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VJV FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.59Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vjv OCA], [https://pdbe.org/6vjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vjv RCSB], [https://www.ebi.ac.uk/pdbsum/6vjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vjv ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q58M74_BPPRM Q58M74_BPPRM] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Marine cyanobacteria are infected by phages whose genomes encode ferredoxin (Fd) electron carriers. These Fds are thought to redirect the energy harvested from light to phage-encoded oxidoreductases that enhance viral fitness, but it is unclear how the biophysical properties and partner specificities of phage Fds relate to those in photosynthetic organisms. Here, results of a bioinformatics analysis using a sequence similarity network revealed that phage Fds are most closely related to cyanobacterial Fds that transfer electrons from photosystems to oxidoreductases involved in nutrient assimilation. Structural analysis of myovirus P-SSM2 Fd (pssm2-Fd), which infects the cyanobacterium Prochlorococcus marinus, revealed a high similarity to cyanobacterial Fds (</= 0.5 A root-mean-square deviation). Additionally, pssm2-Fd exhibited a low midpoint reduction potential (-336 mV versus standard hydrogen electrode) similar to other photosynthetic Fds, albeit had lower thermostability (Tm = 28 degrees C) than many other Fds. When expressed in an Escherichia coli strain deficient in sulfite assimilation, pssm2-Fd complemented bacterial growth when co-expressed with a P. marinus sulfite reductase, revealing that pssm2-Fd can transfer electrons to a host protein involved in nutrient assimilation. The high structural similarity with cyanobacterial Fds and reactivity with a host sulfite reductase suggest that phage Fds evolved to transfer electrons to cyanobacterial-encoded oxidoreductases. | ||
- | + | Prochlorococcus phage ferredoxin: Structural characterization and electron transfer to cyanobacterial sulfite reductases.,Campbell IJ, Olmos JL Jr, Xu W, Kahanda D, Atkinson JT, Sparks ON, Miller MD, Phillips GN Jr, Bennett GN, Silberg JJ J Biol Chem. 2020 May 19. pii: RA120.013501. doi: 10.1074/jbc.RA120.013501. PMID:32434930<ref>PMID:32434930</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 6vjv" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | |
- | [[Category: | + | ==See Also== |
- | [[Category: | + | *[[Ferredoxin 3D structures|Ferredoxin 3D structures]] |
- | [[Category: Kahanda | + | == References == |
- | [[Category: Miller | + | <references/> |
- | [[Category: | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: Silberg | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Prochlorococcus phage P-SSM2]] |
- | + | [[Category: Atkinson JT]] | |
- | [[Category: Xu | + | [[Category: Bennett GN]] |
+ | [[Category: Campbell IJ]] | ||
+ | [[Category: Kahanda D]] | ||
+ | [[Category: Miller MD]] | ||
+ | [[Category: Olmos Jr JL]] | ||
+ | [[Category: Phillips Jr GN]] | ||
+ | [[Category: Silberg JJ]] | ||
+ | [[Category: Sparks N]] | ||
+ | [[Category: Xu W]] |
Current revision
Crystal structure of the Prochlorococcus phage (myovirus P-SSM2) ferredoxin at 1.6 Angstroms
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