This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y8i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:53, 23 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1y8i' size='340' side='right'caption='[[1y8i]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='1y8i' size='340' side='right'caption='[[1y8i]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1y8i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y8I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1y8i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y8I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y8I FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1jy7|1jy7]], [[1lfq|1lfq]], [[1y8h|1y8h]], [[1y8k|1y8k]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y8i OCA], [http://pdbe.org/1y8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y8i RCSB], [http://www.ebi.ac.uk/pdbsum/1y8i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y8i ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y8i OCA], [https://pdbe.org/1y8i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y8i RCSB], [https://www.ebi.ac.uk/pdbsum/1y8i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y8i ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HBA_HORSE HBA_HORSE]] Involved in oxygen transport from the lung to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB_HORSE HBB_HORSE]] Involved in oxygen transport from the lung to the various peripheral tissues.
+
[https://www.uniprot.org/uniprot/HBA_HORSE HBA_HORSE] Involved in oxygen transport from the lung to the various peripheral tissues.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 38: Line 38:
[[Category: Equus caballus]]
[[Category: Equus caballus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Biswal, B K]]
+
[[Category: Biswal BK]]
-
[[Category: Sankaranarayanan, R]]
+
[[Category: Sankaranarayanan R]]
-
[[Category: Vijayan, M]]
+
[[Category: Vijayan M]]
-
[[Category: Allosteric transition]]
+
-
[[Category: Aquo methemoglobin]]
+
-
[[Category: Oxygen storage-transport complex]]
+
-
[[Category: Protein hydration]]
+
-
[[Category: Quarternary association]]
+

Current revision

Horse methemoglobin low salt, PH 7.0 (98% relative humidity)

PDB ID 1y8i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools